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INDEXED
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MeasurementSet
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IGVFDS3949LHHW
IGVFDS3949LHHW
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X050_G3_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0199AWVE
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HC3LT3
5
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0488DFLG
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HC3LT3
7
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1802EWLT
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HC3LT3
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2484XCBE
fastq
reads
I1
1
Illumina NovaSeq X
223HC3LT3
5
478 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2955CNFL
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HC3LT3
6
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3233GGEZ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HC3LT3
5
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3376WXRT
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HC3LT3
6
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5684YMTX
fastq
reads
I1
1
Illumina NovaSeq X
223HC3LT3
8
493 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6731PJSS
fastq
reads
I1
1
Illumina NovaSeq X
223HC3LT3
6
483 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7443GYRV
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HC3LT3
7
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3258TKYR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples
Donors
10 items
Accession
Aliases
Sex
Taxa
IGVFDO0967LMSM
igvf:corces_donor_BANN1973
male
Homo sapiens
IGVFDO2559GIIZ
igvf:corces_donor_BANN2103
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO9236YUAT
igvf:corces_donor_BANN0227
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7168ZWPA
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X050_G3_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF