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MeasurementSet
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IGVFDS3912RWNQ
IGVFDS3912RWNQ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP002_G1_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0008CWFG
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
2
268 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0299AOWV
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
4
279 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0632QRJZ
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
3
246 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0714QJUB
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
1
224 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0965THFA
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
2
237 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2388ADBS
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
2
831 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2891ZYOS
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
1
805 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3265MAGO
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
4
245 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4253SRKQ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
4
901 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5413KTHO
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
1
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM2125NOYE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4438WASY
igvf:corces_donor_BANN1644
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7649CIGW
igvf:corces_donor_BANN9902
female
Homo sapiens
IGVFDO8451NMBP
igvf:corces_donor_BANN1756
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3205MIGH
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP002_G1_ATAC
Ryan Corces, Gladstone Institute UCSF