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{
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"detail": "Measurement set [IGVFDS3904LNOW](/measurement-sets/IGVFDS3904LNOW/) has sequence file(s): [IGVFFI8804DMXM](/sequence-files/IGVFFI8804DMXM/), [IGVFFI1516MVXQ](/sequence-files/IGVFFI1516MVXQ/), [IGVFFI1336SNOV](/sequence-files/IGVFFI1336SNOV/), [IGVFFI4292CQWP](/sequence-files/IGVFFI4292CQWP/), [IGVFFI7569RLHN](/sequence-files/IGVFFI7569RLHN/), [IGVFFI4948TKXN](/sequence-files/IGVFFI4948TKXN/), [IGVFFI7294TGSF](/sequence-files/IGVFFI7294TGSF/), [IGVFFI9423TSUQ](/sequence-files/IGVFFI9423TSUQ/), [IGVFFI0739VIYP](/sequence-files/IGVFFI0739VIYP/), [IGVFFI8561SNRI](/sequence-files/IGVFFI8561SNRI/), [IGVFFI5490CXDM](/sequence-files/IGVFFI5490CXDM/), [IGVFFI2008VWMG](/sequence-files/IGVFFI2008VWMG/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3904LNOW/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS3904LNOW](/measurement-sets/IGVFDS3904LNOW/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS3904LNOW/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS3904LNOW](/measurement-sets/IGVFDS3904LNOW/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS3904LNOW/"
}
]
},
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},
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},
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],
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],
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},
{
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],
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},
{
"@id": "/human-donors/IGVFDO0909BNTN/",
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],
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},
{
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],
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},
{
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"igvf:corces_donor_BANN0218"
],
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},
{
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},
{
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],
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},
{
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],
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}
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},
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},
{
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},
{
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{
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},
{
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{
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{
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{
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},
{
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],
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}
],
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"lab": {
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},
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"onlist_files": [
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],
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],
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{
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}
],
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{
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],
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],
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],
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{
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},
{
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}
],
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}
],
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"sample_terms": [
{
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"@type": [
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"OntologyTerm",
"Item"
],
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},
{
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"@type": [
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"OntologyTerm",
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],
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},
{
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"@type": [
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"Item"
],
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}
],
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"summary": "multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
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"submitted_by": {
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},
"submitted_files_timestamp": "2025-03-21T03:29:50.253241+00:00",
"summary": "single-nucleus ATAC-seq (10x multiome)",
"uuid": "2c3fd2d6-d11f-4670-b52a-748d3d35fd85"
}