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INDEXED
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MeasurementSet
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IGVFDS3823QNVI
IGVFDS3823QNVI
released
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Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C39_day3
Attribution
Chongyuan Luo, UCLA
(
HG012079
—
Chongyuan Luo
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1223RIEE
fastq
reads
R2
2
Illumina NovaSeq X
8
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI1316EQAV
fastq
reads
R1
1
Illumina NovaSeq X
5
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI1659HAKW
fastq
reads
R1
1
Illumina NovaSeq X
4
2.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI1744BXCF
fastq
reads
R1
1
Illumina NovaSeq X
1
2.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI1849YIKZ
fastq
reads
R2
2
Illumina NovaSeq X
4
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI1922WYXT
fastq
reads
R1
1
Illumina NovaSeq X
6
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI2089LWFS
fastq
reads
R2
2
Illumina NovaSeq X
3
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI2674UUIH
fastq
reads
R2
2
Illumina NovaSeq X
2
2.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI5080XEJQ
fastq
reads
R2
2
Illumina NovaSeq X
6
2.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI5158VCSX
fastq
reads
R1
1
Illumina NovaSeq X
3
2.5 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6688THZN
InVitroSystem
fibroblast
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4068JJIT
chongyuan-luo:C39
unspecified
Homo sapiens