{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3765SWWC/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3765SWWC",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2557IAGR](/in-vitro-systems/IGVFSM2557IAGR/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2557IAGR/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS3765SWWC](/measurement-sets/IGVFDS3765SWWC/) has sequence file(s) [IGVFFI2510ASDE](/sequence-files/IGVFFI2510ASDE/), [IGVFFI0601XPFY](/sequence-files/IGVFFI0601XPFY/), [IGVFFI1424IKFY](/sequence-files/IGVFFI1424IKFY/), [IGVFFI0760ZZUA](/sequence-files/IGVFFI0760ZZUA/), [IGVFFI6249UMFI](/sequence-files/IGVFFI6249UMFI/), [IGVFFI5710TBVP](/sequence-files/IGVFFI5710TBVP/), [IGVFFI8170ELEN](/sequence-files/IGVFFI8170ELEN/), [IGVFFI5845SYKV](/sequence-files/IGVFFI5845SYKV/), [IGVFFI4139XIUZ](/sequence-files/IGVFFI4139XIUZ/), [IGVFFI1585IGGH](/sequence-files/IGVFFI1585IGGH/), [IGVFFI6987FQET](/sequence-files/IGVFFI6987FQET/), [IGVFFI8980OZIR](/sequence-files/IGVFFI8980OZIR/), [IGVFFI7476FAEF](/sequence-files/IGVFFI7476FAEF/), [IGVFFI9366IRCH](/sequence-files/IGVFFI9366IRCH/), [IGVFFI3902DBNN](/sequence-files/IGVFFI3902DBNN/), [IGVFFI3155EKEY](/sequence-files/IGVFFI3155EKEY/), [IGVFFI6268SEMT](/sequence-files/IGVFFI6268SEMT/), [IGVFFI5420GUHQ](/sequence-files/IGVFFI5420GUHQ/), [IGVFFI4925QRTR](/sequence-files/IGVFFI4925QRTR/), [IGVFFI1800NRAG](/sequence-files/IGVFFI1800NRAG/), [IGVFFI1667VREQ](/sequence-files/IGVFFI1667VREQ/), [IGVFFI4271CIHQ](/sequence-files/IGVFFI4271CIHQ/), [IGVFFI5496HCDH](/sequence-files/IGVFFI5496HCDH/), [IGVFFI3826WHUR](/sequence-files/IGVFFI3826WHUR/), [IGVFFI7392SJRB](/sequence-files/IGVFFI7392SJRB/), [IGVFFI5177VTTC](/sequence-files/IGVFFI5177VTTC/), [IGVFFI7239FHHM](/sequence-files/IGVFFI7239FHHM/), [IGVFFI0617MYPV](/sequence-files/IGVFFI0617MYPV/), [IGVFFI4537FCCI](/sequence-files/IGVFFI4537FCCI/), [IGVFFI7027GQXC](/sequence-files/IGVFFI7027GQXC/), [IGVFFI8994SLCX](/sequence-files/IGVFFI8994SLCX/), [IGVFFI8651DLZB](/sequence-files/IGVFFI8651DLZB/), [IGVFFI1426JKWP](/sequence-files/IGVFFI1426JKWP/), [IGVFFI3161DWEU](/sequence-files/IGVFFI3161DWEU/), [IGVFFI9051TCCZ](/sequence-files/IGVFFI9051TCCZ/), [IGVFFI4650NLWV](/sequence-files/IGVFFI4650NLWV/), [IGVFFI8671NHNC](/sequence-files/IGVFFI8671NHNC/), [IGVFFI4563ZWDG](/sequence-files/IGVFFI4563ZWDG/), [IGVFFI2813ARMS](/sequence-files/IGVFFI2813ARMS/), [IGVFFI3587LMNL](/sequence-files/IGVFFI3587LMNL/), [IGVFFI6151SNGD](/sequence-files/IGVFFI6151SNGD/), [IGVFFI8435LCYS](/sequence-files/IGVFFI8435LCYS/), [IGVFFI7807MTEI](/sequence-files/IGVFFI7807MTEI/), [IGVFFI6728VMSV](/sequence-files/IGVFFI6728VMSV/), [IGVFFI6865FKIY](/sequence-files/IGVFFI6865FKIY/), [IGVFFI8363TESH](/sequence-files/IGVFFI8363TESH/), [IGVFFI2673CTYV](/sequence-files/IGVFFI2673CTYV/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS3765SWWC/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3765SWWC](/measurement-sets/IGVFDS3765SWWC/) has sequence file(s): [IGVFFI2510ASDE](/sequence-files/IGVFFI2510ASDE/), [IGVFFI0601XPFY](/sequence-files/IGVFFI0601XPFY/), [IGVFFI1424IKFY](/sequence-files/IGVFFI1424IKFY/), [IGVFFI0760ZZUA](/sequence-files/IGVFFI0760ZZUA/), [IGVFFI6249UMFI](/sequence-files/IGVFFI6249UMFI/), [IGVFFI5710TBVP](/sequence-files/IGVFFI5710TBVP/), [IGVFFI8170ELEN](/sequence-files/IGVFFI8170ELEN/), [IGVFFI5845SYKV](/sequence-files/IGVFFI5845SYKV/), [IGVFFI4139XIUZ](/sequence-files/IGVFFI4139XIUZ/), [IGVFFI1585IGGH](/sequence-files/IGVFFI1585IGGH/), [IGVFFI6987FQET](/sequence-files/IGVFFI6987FQET/), [IGVFFI8980OZIR](/sequence-files/IGVFFI8980OZIR/), [IGVFFI7476FAEF](/sequence-files/IGVFFI7476FAEF/), [IGVFFI9366IRCH](/sequence-files/IGVFFI9366IRCH/), [IGVFFI3902DBNN](/sequence-files/IGVFFI3902DBNN/), [IGVFFI3155EKEY](/sequence-files/IGVFFI3155EKEY/), [IGVFFI6268SEMT](/sequence-files/IGVFFI6268SEMT/), [IGVFFI5420GUHQ](/sequence-files/IGVFFI5420GUHQ/), [IGVFFI4925QRTR](/sequence-files/IGVFFI4925QRTR/), [IGVFFI1800NRAG](/sequence-files/IGVFFI1800NRAG/), [IGVFFI1667VREQ](/sequence-files/IGVFFI1667VREQ/), [IGVFFI4271CIHQ](/sequence-files/IGVFFI4271CIHQ/), [IGVFFI5496HCDH](/sequence-files/IGVFFI5496HCDH/), [IGVFFI3826WHUR](/sequence-files/IGVFFI3826WHUR/), [IGVFFI7392SJRB](/sequence-files/IGVFFI7392SJRB/), [IGVFFI5177VTTC](/sequence-files/IGVFFI5177VTTC/), [IGVFFI7239FHHM](/sequence-files/IGVFFI7239FHHM/), [IGVFFI0617MYPV](/sequence-files/IGVFFI0617MYPV/), [IGVFFI4537FCCI](/sequence-files/IGVFFI4537FCCI/), [IGVFFI7027GQXC](/sequence-files/IGVFFI7027GQXC/), [IGVFFI8994SLCX](/sequence-files/IGVFFI8994SLCX/), [IGVFFI8651DLZB](/sequence-files/IGVFFI8651DLZB/), [IGVFFI1426JKWP](/sequence-files/IGVFFI1426JKWP/), [IGVFFI3161DWEU](/sequence-files/IGVFFI3161DWEU/), [IGVFFI9051TCCZ](/sequence-files/IGVFFI9051TCCZ/), [IGVFFI4650NLWV](/sequence-files/IGVFFI4650NLWV/), [IGVFFI8671NHNC](/sequence-files/IGVFFI8671NHNC/), [IGVFFI4563ZWDG](/sequence-files/IGVFFI4563ZWDG/), [IGVFFI2813ARMS](/sequence-files/IGVFFI2813ARMS/), [IGVFFI3587LMNL](/sequence-files/IGVFFI3587LMNL/), [IGVFFI6151SNGD](/sequence-files/IGVFFI6151SNGD/), [IGVFFI8435LCYS](/sequence-files/IGVFFI8435LCYS/), [IGVFFI7807MTEI](/sequence-files/IGVFFI7807MTEI/), [IGVFFI6728VMSV](/sequence-files/IGVFFI6728VMSV/), [IGVFFI6865FKIY](/sequence-files/IGVFFI6865FKIY/), [IGVFFI8363TESH](/sequence-files/IGVFFI8363TESH/), [IGVFFI2673CTYV](/sequence-files/IGVFFI2673CTYV/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3765SWWC/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS3765SWWC](/measurement-sets/IGVFDS3765SWWC/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS3765SWWC/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
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"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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}
],
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{
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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