{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3698WBTT/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3698WBTT",
"aliases": [
"ali-mortazavi:007_67D_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM9424CEIP](/multiplexed-samples/IGVFSM9424CEIP/) has in progress subobject tabular file [IGVFFI4658LINI](/tabular-files/IGVFFI4658LINI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM9424CEIP/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM9424CEIP](/multiplexed-samples/IGVFSM9424CEIP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM9424CEIP/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS3698WBTT](/measurement-sets/IGVFDS3698WBTT/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS3698WBTT/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS3698WBTT](/measurement-sets/IGVFDS3698WBTT/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS3698WBTT/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS3698WBTT](/measurement-sets/IGVFDS3698WBTT/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS3698WBTT/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-09T17:25:57.609717+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2517TXOT/",
"accession": "IGVFDO2517TXOT",
"aliases": [
"ali-mortazavi:092_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI3881LNEO/",
"accession": "IGVFFI3881LNEO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T06:53:56.299462+00:00",
"file_format": "fastq",
"file_size": 5938332715,
"href": "/sequence-files/IGVFFI3881LNEO/@@download/IGVFFI3881LNEO.fastq.gz",
"md5sum": "707a9eebcd8455036793a9e7dbfc1cc9",
"s3_uri": "s3://igvf-files/2023/10/10/799e651f-b9be-4ec2-abe0-1540ffc6a7b8/IGVFFI3881LNEO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B05_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1603PXEF/",
"accession": "IGVFFI1603PXEF",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:04:02.853032+00:00",
"file_format": "fastq",
"file_size": 12125582433,
"href": "/sequence-files/IGVFFI1603PXEF/@@download/IGVFFI1603PXEF.fastq.gz",
"md5sum": "9e2d1db3970e75683953367254d2d964",
"s3_uri": "s3://igvf-files/2023/10/10/f94ed2a3-f364-4014-b1ea-c875fe496f74/IGVFFI1603PXEF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B05_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5363EHRL/",
"accession": "IGVFFI5363EHRL",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:46:20.349425+00:00",
"file_format": "fastq",
"file_size": 5828518055,
"href": "/sequence-files/IGVFFI5363EHRL/@@download/IGVFFI5363EHRL.fastq.gz",
"md5sum": "20b30c077ed02e043a6e4336eeeb0758",
"s3_uri": "s3://igvf-files/2023/10/10/f8d259b6-c71d-41c6-81fd-13e9bac8588d/IGVFFI5363EHRL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B05_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7304YZEJ/",
"accession": "IGVFFI7304YZEJ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:11:56.133911+00:00",
"file_format": "fastq",
"file_size": 11834403539,
"href": "/sequence-files/IGVFFI7304YZEJ/@@download/IGVFFI7304YZEJ.fastq.gz",
"md5sum": "44fd8ed818020fb60f3800543b276465",
"s3_uri": "s3://igvf-files/2023/10/10/7a634b66-2c29-4889-b260-5b70236b4546/IGVFFI7304YZEJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B05_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2001VCPB/",
"accession": "IGVFFI2001VCPB",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:27:02.418886+00:00",
"file_format": "fastq",
"file_size": 11681914751,
"href": "/sequence-files/IGVFFI2001VCPB/@@download/IGVFFI2001VCPB.fastq.gz",
"md5sum": "52e7806393ef2f52c9c6ee5cecbf0081",
"s3_uri": "s3://igvf-files/2023/10/10/52b0ebbd-3f07-4a60-9118-5ae998650cfe/IGVFFI2001VCPB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B05_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3573MKWS/",
"accession": "IGVFFI3573MKWS",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:01:31.001682+00:00",
"file_format": "fastq",
"file_size": 5904292374,
"href": "/sequence-files/IGVFFI3573MKWS/@@download/IGVFFI3573MKWS.fastq.gz",
"md5sum": "0de7973d87c40d1a36840bb0c062c930",
"s3_uri": "s3://igvf-files/2023/10/10/361fe24f-dc5b-47bc-b257-dcfb0af5cda3/IGVFFI3573MKWS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B05_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7019RANP/",
"accession": "IGVFFI7019RANP",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:34:24.138322+00:00",
"file_format": "fastq",
"file_size": 11572426684,
"href": "/sequence-files/IGVFFI7019RANP/@@download/IGVFFI7019RANP.fastq.gz",
"md5sum": "e1211ff13ee8492222ca2093cd6195d4",
"s3_uri": "s3://igvf-files/2023/10/10/c3bc2d9c-70e0-47b2-88e7-f033a2c6252b/IGVFFI7019RANP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B05_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1428OIVR/",
"accession": "IGVFFI1428OIVR",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T06:56:25.362057+00:00",
"file_format": "fastq",
"file_size": 11941217077,
"href": "/sequence-files/IGVFFI1428OIVR/@@download/IGVFFI1428OIVR.fastq.gz",
"md5sum": "32462eca85529e540b1c4471677e7a89",
"s3_uri": "s3://igvf-files/2023/10/10/81f2a7a7-c97d-473f-a209-73851c50478a/IGVFFI1428OIVR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B05_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2180HKCO/",
"accession": "IGVFFI2180HKCO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:19:38.321654+00:00",
"file_format": "fastq",
"file_size": 11602221466,
"href": "/sequence-files/IGVFFI2180HKCO/@@download/IGVFFI2180HKCO.fastq.gz",
"md5sum": "4919baeff5b1e9e26a25054d508bebb8",
"s3_uri": "s3://igvf-files/2023/10/10/414bfd94-d0c5-4d5d-bed5-752e8dac527e/IGVFFI2180HKCO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B05_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3618KLBN/",
"accession": "IGVFFI3618KLBN",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:41:39.124536+00:00",
"file_format": "fastq",
"file_size": 11679991523,
"href": "/sequence-files/IGVFFI3618KLBN/@@download/IGVFFI3618KLBN.fastq.gz",
"md5sum": "2b385af7a7ce5a9ddb1a111bd189407c",
"s3_uri": "s3://igvf-files/2023/10/10/8bae2ac7-dff6-45c9-8a9a-05829d48f3e0/IGVFFI3618KLBN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B05_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7177NHYO/",
"accession": "IGVFFI7177NHYO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T06:48:49.994365+00:00",
"file_format": "fastq",
"file_size": 11994383267,
"href": "/sequence-files/IGVFFI7177NHYO/@@download/IGVFFI7177NHYO.fastq.gz",
"md5sum": "51193373e4ddafa399305ba48ce70929",
"s3_uri": "s3://igvf-files/2023/10/10/d668bc3e-8181-43a7-8f44-c66a11c9e1d5/IGVFFI7177NHYO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B05_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0993CBVI/",
"accession": "IGVFFI0993CBVI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:09:13.205423+00:00",
"file_format": "fastq",
"file_size": 6010041115,
"href": "/sequence-files/IGVFFI0993CBVI/@@download/IGVFFI0993CBVI.fastq.gz",
"md5sum": "73b9a51b39442520327786e2506bbd0d",
"s3_uri": "s3://igvf-files/2023/10/10/73e34563-ddd7-4897-b990-729f77761ae1/IGVFFI0993CBVI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B05_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7159NIPO/",
"accession": "IGVFFI7159NIPO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:17:06.994415+00:00",
"file_format": "fastq",
"file_size": 5852088204,
"href": "/sequence-files/IGVFFI7159NIPO/@@download/IGVFFI7159NIPO.fastq.gz",
"md5sum": "cfd0fb7a88f7f428cb992b8204edf5e6",
"s3_uri": "s3://igvf-files/2023/10/10/8d628c87-3017-4983-b056-2e2360f6aa8f/IGVFFI7159NIPO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B05_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8121COVM/",
"accession": "IGVFFI8121COVM",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:24:36.926147+00:00",
"file_format": "fastq",
"file_size": 5818104507,
"href": "/sequence-files/IGVFFI8121COVM/@@download/IGVFFI8121COVM.fastq.gz",
"md5sum": "282dfa6434f87380826e6ee099d6c670",
"s3_uri": "s3://igvf-files/2023/10/10/925ff65a-47b6-4330-b68a-c2b7bb0168ab/IGVFFI8121COVM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B05_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7971WVBU/",
"accession": "IGVFFI7971WVBU",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:31:53.275504+00:00",
"file_format": "fastq",
"file_size": 5837574862,
"href": "/sequence-files/IGVFFI7971WVBU/@@download/IGVFFI7971WVBU.fastq.gz",
"md5sum": "fbe19808faea2082bb08bb59b912a83c",
"s3_uri": "s3://igvf-files/2023/10/10/e638dfc5-39e4-4ed4-821d-f71f2638f37c/IGVFFI7971WVBU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B05_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9505LHLA/",
"accession": "IGVFFI9505LHLA",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T07:39:12.090091+00:00",
"file_format": "fastq",
"file_size": 5774123939,
"href": "/sequence-files/IGVFFI9505LHLA/@@download/IGVFFI9505LHLA.fastq.gz",
"md5sum": "acf61a2a3940c0192526e949c7f7cdc8",
"s3_uri": "s3://igvf-files/2023/10/10/30b8d0b2-56d9-4a32-8d77-1e58eae3b696/IGVFFI9505LHLA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B05_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7952IAGN/",
"accession": "IGVFFI7952IAGN",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:29.521141+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI7952IAGN/@@download/IGVFFI7952IAGN.yaml.gz",
"md5sum": "46ea2302ed4a15eeb8b6e9d2dc4c866a",
"s3_uri": "s3://igvf-files/2024/09/17/f3471626-6739-4bc7-8ee9-67b6b2b88f1d/IGVFFI7952IAGN.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1044DRDU/",
"accession": "IGVFFI1044DRDU",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:36.950048+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI1044DRDU/@@download/IGVFFI1044DRDU.yaml.gz",
"md5sum": "774cb2c01b93ccb8263cd0d26c92a430",
"s3_uri": "s3://igvf-files/2024/09/17/dcf16ef6-b744-4864-b479-6f667aa8c0ec/IGVFFI1044DRDU.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9158XOCF/",
"accession": "IGVFFI9158XOCF",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:30.709241+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI9158XOCF/@@download/IGVFFI9158XOCF.yaml.gz",
"md5sum": "a3f51488e1c31262c084e3a70d8c9924",
"s3_uri": "s3://igvf-files/2024/09/17/fad54511-f3de-424f-a114-15e49fc49daf/IGVFFI9158XOCF.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6561FBBO/",
"accession": "IGVFFI6561FBBO",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:31.984001+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI6561FBBO/@@download/IGVFFI6561FBBO.yaml.gz",
"md5sum": "37c2399c0cede2c115b028cf4f714564",
"s3_uri": "s3://igvf-files/2024/09/17/63f80d12-958f-4e1e-b1fa-350219876d63/IGVFFI6561FBBO.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9011RGPS/",
"accession": "IGVFFI9011RGPS",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:34.436648+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI9011RGPS/@@download/IGVFFI9011RGPS.yaml.gz",
"md5sum": "95fe0e442a413bce0afd7662c358a680",
"s3_uri": "s3://igvf-files/2024/09/17/d4b0a97f-d81b-414b-94c7-957cf4a0b92e/IGVFFI9011RGPS.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1885NTWH/",
"accession": "IGVFFI1885NTWH",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:28.328673+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI1885NTWH/@@download/IGVFFI1885NTWH.yaml.gz",
"md5sum": "cf75b66006d5ea4841e4286044d0254b",
"s3_uri": "s3://igvf-files/2024/09/17/1b5fffae-b6b1-43b4-84fd-c93bd4516f1d/IGVFFI1885NTWH.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2934GVVB/",
"accession": "IGVFFI2934GVVB",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:33.243362+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI2934GVVB/@@download/IGVFFI2934GVVB.yaml.gz",
"md5sum": "f77046291ca3f03d664874be70257237",
"s3_uri": "s3://igvf-files/2024/09/17/9a70c866-519d-469c-8c90-1977e868f4c9/IGVFFI2934GVVB.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1864LJCA/",
"accession": "IGVFFI1864LJCA",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:35.609057+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI1864LJCA/@@download/IGVFFI1864LJCA.yaml.gz",
"md5sum": "7126d7ceacd35f21a06e10178acb5ccc",
"s3_uri": "s3://igvf-files/2024/09/17/ae13b15f-191c-4c3b-823f-0e2cebc501b5/IGVFFI1864LJCA.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS8925NHBX/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-36wgq3e3ylk5/v1",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n92ldm8b8l5b/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-5qpvo3837v4o/v1",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-19T17:57:36.125108+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM9424CEIP/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9424CEIP",
"aliases": [
"ali-mortazavi:subpool_007_67D"
],
"cellular_sub_pool": "007_67D",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000007/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "pituitary gland",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0000473/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "testis",
"term_name": "testis"
},
{
"@id": "/sample-terms/UBERON_0000992/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "ovary",
"term_name": "ovary"
},
{
"@id": "/sample-terms/UBERON_0000993/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "oviduct",
"term_name": "oviduct"
},
{
"@id": "/sample-terms/UBERON_0001301/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "epididymis",
"term_name": "epididymis"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "hypothalamus",
"term_name": "hypothalamus"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-10T06:48:49.994365+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "8793111e-4a3c-4e53-9d1e-1f38a4a800d6"
}