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IGVFDS3677FWQE

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples
Protocols
Aliases
igvf:corces_measurementSet_X052_G6_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
I1
1
19RTCA4LE
6
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19RTCA4LE
7
13 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19RTCA4LE
6
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19RTCA4LE
7
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19RTCA4LE
7
3.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19RTCA4LE
7
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19RTCA4LE
6
13 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19RTCA4LE
6
3.3 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples

Donors

10 items
Aliases
  • igvf:corces_donor_BANN1030
male
Homo sapiens
  • igvf:corces_donor_BANN1719
female
Homo sapiens
  • igvf:corces_donor_BANN0129
male
Homo sapiens
  • igvf:corces_donor_BANN1070
male
Homo sapiens
  • igvf:corces_donor_BANN0124
male
Homo sapiens
  • igvf:corces_donor_BANN0210
male
Homo sapiens
  • igvf:corces_donor_BANN1234
male
Homo sapiens
  • igvf:corces_donor_BANN1349
female
Homo sapiens
  • igvf:corces_donor_BANN1570
male
Homo sapiens
  • igvf:corces_donor_BANN1504
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X052_G6_RNA
Ryan Corces, Gladstone Institute UCSF