{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
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],
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"chromatin accessibility"
],
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},
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"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4239FRER](/in-vitro-systems/IGVFSM4239FRER/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4239FRER/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS3674UEBD](/measurement-sets/IGVFDS3674UEBD/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS3674UEBD/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS3674UEBD](/measurement-sets/IGVFDS3674UEBD/) has in progress subobject tabular file [IGVFFI4393VVCW](/tabular-files/IGVFFI4393VVCW/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS3674UEBD/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS3674UEBD](/measurement-sets/IGVFDS3674UEBD/) has in progress subobject tabular file [IGVFFI9683HRGJ](/tabular-files/IGVFFI9683HRGJ/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS3674UEBD/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS3674UEBD](/measurement-sets/IGVFDS3674UEBD/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS3674UEBD/"
}
]
},
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"component": "mapping",
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
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"description": "Colitis_derived DSS21BC-DSS-m1,DSS21BC-DSS-m2,DSS21BC-DSS-m3; Control DSS21BC-DSS-m7,DSS21BC-DSS-m8,DSS21BC-DSS-m9",
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],
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},
{
"@id": "/rodent-donors/IGVFDO4498WUFA/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO6240POWU/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO5516DGOZ/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO4618QNAL/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO4379PNRX/",
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],
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}
],
"externally_hosted": false,
"file_set_type": "experimental data",
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},
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"s3_uri": "s3://igvf-files/2025/02/07/9b1b0607-27a0-4d51-b6e5-94c5617c31a0/IGVFFI9265HLQG.fastq.gz",
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"s3_uri": "s3://igvf-files/2025/02/07/65ca6725-ed38-445c-bd13-ba1e45829c4c/IGVFFI8206VEGU.fastq.gz",
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},
{
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}
],
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"title": "Jason Buenrostro, Broad"
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],
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],
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{
"@id": "/measurement-sets/IGVFDS9059ORGF/",
"accession": "IGVFDS9059ORGF",
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},
{
"@id": "/measurement-sets/IGVFDS2183INAQ/",
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{
"@id": "/measurement-sets/IGVFDS3954OIWN/",
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{
"@id": "/measurement-sets/IGVFDS0262EFJS/",
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{
"@id": "/measurement-sets/IGVFDS6770YNZR/",
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},
{
"@id": "/measurement-sets/IGVFDS0255ZBJH/",
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},
{
"@id": "/measurement-sets/IGVFDS7053XLPM/",
"accession": "IGVFDS7053XLPM",
"status": "released"
}
],
"release_timestamp": "2025-03-26T17:33:56.444721+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4239FRER/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4239FRER",
"aliases": [
"buenrostro-bernstein:surya-DSS21BC-DSS-m1,DSS21BC-DSS-m2,DSS21BC-DSS-m3,DSS21BC-DSS-m7,DSS21BC-DSS-m8,DSS21BC-DSS-m9"
],
"classifications": [
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],
"institutional_certificates": [],
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{
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"@type": [
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"OntologyTerm",
"Item"
],
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"summary": "colonic epithelium",
"term_name": "colonic epithelium"
}
],
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"summary": "Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days",
"targeted_sample_term": {
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"status": "released",
"term_name": "colon"
},
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}
],
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"status": "released",
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},
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"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "7640bd46-66fd-4114-9350-8fe49fc0ef24"
}