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IGVFDS3666WZCD

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 42.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 32.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX5-SC4_snATAC

Sequencing Results (Illumina)

20 items
Read Names
fastq
reads
R2
467
Barcode index
3.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
468
Read 1
5.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
465
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
464
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
464
Read 2
8.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
464
Barcode index
3.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
468
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
467
Read 1
5.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
465
Barcode index
3.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
468
Read 2
8.9 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 42.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 32.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_294
male
Homo sapiens
  • jimmie-ye:donor_36
male
Homo sapiens
  • jimmie-ye:donor_66
female
Homo sapiens
  • jimmie-ye:donor_88
female
Homo sapiens
  • jimmie-ye:donor_271
male
Homo sapiens
  • jimmie-ye:donor_78
female
Homo sapiens
  • jimmie-ye:donor_207
male
Homo sapiens
  • jimmie-ye:donor_91
male
Homo sapiens
  • jimmie-ye:donor_30
male
Homo sapiens
  • jimmie-ye:donor_94
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX5-SC4_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF