{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
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"aliases": [
"bradley-bernstein:scRNA Lib 25",
"buenrostro-bernstein:scRNA Lib 25"
],
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"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM7251TZFC](/primary-cells/IGVFSM7251TZFC/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM7251TZFC/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3642NEVV](/measurement-sets/IGVFDS3642NEVV/) has sequence file(s): [IGVFFI4059PDDO](/sequence-files/IGVFFI4059PDDO/), [IGVFFI8043LYVQ](/sequence-files/IGVFFI8043LYVQ/), [IGVFFI1683TOVH](/sequence-files/IGVFFI1683TOVH/), [IGVFFI6116NHMX](/sequence-files/IGVFFI6116NHMX/), [IGVFFI3586QVZS](/sequence-files/IGVFFI3586QVZS/), [IGVFFI7539ZPVB](/sequence-files/IGVFFI7539ZPVB/), [IGVFFI6822JJVL](/sequence-files/IGVFFI6822JJVL/), [IGVFFI3227UMSV](/sequence-files/IGVFFI3227UMSV/), [IGVFFI3532IJYB](/sequence-files/IGVFFI3532IJYB/), [IGVFFI1659TORI](/sequence-files/IGVFFI1659TORI/), [IGVFFI9739WHAC](/sequence-files/IGVFFI9739WHAC/), [IGVFFI7671SQNA](/sequence-files/IGVFFI7671SQNA/), [IGVFFI4018PRYW](/sequence-files/IGVFFI4018PRYW/), [IGVFFI6026XURL](/sequence-files/IGVFFI6026XURL/), [IGVFFI6372XVNE](/sequence-files/IGVFFI6372XVNE/), [IGVFFI6738DQFD](/sequence-files/IGVFFI6738DQFD/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3642NEVV/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS3642NEVV](/measurement-sets/IGVFDS3642NEVV/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS3642NEVV/"
}
]
},
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},
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