{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3597FNVD",
"aliases": [
"bradley-bernstein:scATAC Lib 9",
"buenrostro-bernstein:scATAC Lib 9"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3597FNVD](/measurement-sets/IGVFDS3597FNVD/) has sequence file(s): [IGVFFI1341BMFL](/sequence-files/IGVFFI1341BMFL/), [IGVFFI1108HBLB](/sequence-files/IGVFFI1108HBLB/), [IGVFFI2642ITVN](/sequence-files/IGVFFI2642ITVN/), [IGVFFI9404YNDU](/sequence-files/IGVFFI9404YNDU/), [IGVFFI0267SIKO](/sequence-files/IGVFFI0267SIKO/), [IGVFFI9563CLFR](/sequence-files/IGVFFI9563CLFR/), [IGVFFI6446MGAU](/sequence-files/IGVFFI6446MGAU/), [IGVFFI3602RYKT](/sequence-files/IGVFFI3602RYKT/), [IGVFFI8568VGEW](/sequence-files/IGVFFI8568VGEW/), [IGVFFI2200XLYZ](/sequence-files/IGVFFI2200XLYZ/), [IGVFFI1288YZWG](/sequence-files/IGVFFI1288YZWG/), [IGVFFI5553SOBT](/sequence-files/IGVFFI5553SOBT/), [IGVFFI0963MCYE](/sequence-files/IGVFFI0963MCYE/), [IGVFFI3554GKSG](/sequence-files/IGVFFI3554GKSG/), [IGVFFI1243XCKS](/sequence-files/IGVFFI1243XCKS/), [IGVFFI2810AASA](/sequence-files/IGVFFI2810AASA/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3597FNVD/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM1342VWSK](/primary-cells/IGVFSM1342VWSK/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM1342VWSK/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS3597FNVD](/measurement-sets/IGVFDS3597FNVD/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS3597FNVD/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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{
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"@type": [
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],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
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"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
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"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:30:27.859414+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "87e79677-d877-43ee-9d44-d9e3ba89c6e4"
}