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INDEXED
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MeasurementSet
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IGVFDS3569UOEO
IGVFDS3569UOEO
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 171)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 393
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
45 items
1
2
3
4
5
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0106NPKJ
fastq
reads
I1
965
Barcode index
IGVFFI4800CXHE
Illumina NovaSeq X
22773CLT3
167 MB
Jason Buenrostro, Broad
validated
IGVFFI0157HVMF
fastq
reads
R2
965
Read 2
IGVFFI4800CXHE
Illumina NovaSeq X
22773CLT3
189 MB
Jason Buenrostro, Broad
validated
IGVFFI0337LYPJ
fastq
reads
I1
8919
Barcode index
IGVFFI9961WACU
Illumina NovaSeq X
22LMVNLT4
2.3 MB
Jason Buenrostro, Broad
validated
IGVFFI0347DJQR
fastq
reads
R1
8919
Read 1
IGVFFI9961WACU
Illumina NovaSeq X
22LMVNLT4
3.9 MB
Jason Buenrostro, Broad
validated
IGVFFI0427ZVVU
fastq
reads
R2
923
Read 2
IGVFFI8025SDQV
Illumina NovaSeq X
22773CLT3
189 MB
Jason Buenrostro, Broad
validated
IGVFFI0596BEHT
fastq
reads
R2
8823
Read 2
IGVFFI5532KKXG
Illumina NovaSeq X
22LMVNLT4
4.0 MB
Jason Buenrostro, Broad
validated
IGVFFI0654CAMM
fastq
reads
I1
1049
Barcode index
IGVFFI8953EJDM
Illumina NovaSeq X
22773CLT3
164 MB
Jason Buenrostro, Broad
validated
IGVFFI0746OPJQ
fastq
reads
R1
4003
Read 1
IGVFFI7570CDVV
Illumina NovaSeq X
22523KLT3
2.9 GB
Jason Buenrostro, Broad
validated
IGVFFI1289PJMU
fastq
reads
R1
923
Read 1
IGVFFI8025SDQV
Illumina NovaSeq X
22773CLT3
393 MB
Jason Buenrostro, Broad
validated
IGVFFI1436PYFZ
fastq
reads
I1
9111
Barcode index
IGVFFI9676DQUN
Illumina NovaSeq X
22LMVNLT4
2.3 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3678KWAC
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 171)
Donors
89 items
1
2
3
4
5
9
Accession
Aliases
Sex
Taxa
IGVFDO0080AJWC
buenrostro-bernstein:Donor 1719
unspecified
Homo sapiens
IGVFDO0188QZTI
buenrostro-bernstein:Donor 1735
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508ZIBJ
buenrostro-bernstein:Donor 1681
unspecified
Homo sapiens
IGVFDO0533MSQJ
buenrostro-bernstein:Donor 1665
unspecified
Homo sapiens
IGVFDO0554TWWH
buenrostro-bernstein:Donor 1663
unspecified
Homo sapiens
IGVFDO0673LUEU
buenrostro-bernstein:Donor 1661
unspecified
Homo sapiens
IGVFDO0817QBZD
buenrostro-bernstein:Donor 1675
unspecified
Homo sapiens
IGVFDO0823IGCQ
buenrostro-bernstein:Donor 1694
unspecified
Homo sapiens
IGVFDO0993WNIW
buenrostro-bernstein:Donor 1668
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6316RPZE
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 420
Jason Buenrostro, Broad