{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3561FSKT/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3561FSKT",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS3561FSKT](/measurement-sets/IGVFDS3561FSKT/) has sequence file(s) [IGVFFI0889MEKX](/sequence-files/IGVFFI0889MEKX/), [IGVFFI3790IBMZ](/sequence-files/IGVFFI3790IBMZ/), [IGVFFI5875UYYV](/sequence-files/IGVFFI5875UYYV/), [IGVFFI0022VIOD](/sequence-files/IGVFFI0022VIOD/), [IGVFFI8986LQYS](/sequence-files/IGVFFI8986LQYS/), [IGVFFI7638OJAS](/sequence-files/IGVFFI7638OJAS/), [IGVFFI0622ZAUE](/sequence-files/IGVFFI0622ZAUE/), [IGVFFI2801ZLNU](/sequence-files/IGVFFI2801ZLNU/), [IGVFFI0727ZNCW](/sequence-files/IGVFFI0727ZNCW/), [IGVFFI4017BJXN](/sequence-files/IGVFFI4017BJXN/), [IGVFFI9065PZZH](/sequence-files/IGVFFI9065PZZH/), [IGVFFI2116SCVI](/sequence-files/IGVFFI2116SCVI/), [IGVFFI2983HFEB](/sequence-files/IGVFFI2983HFEB/), [IGVFFI2234KVEY](/sequence-files/IGVFFI2234KVEY/), [IGVFFI5971ZSND](/sequence-files/IGVFFI5971ZSND/), [IGVFFI6396IJQM](/sequence-files/IGVFFI6396IJQM/), [IGVFFI0423OGGT](/sequence-files/IGVFFI0423OGGT/), [IGVFFI3851TWWR](/sequence-files/IGVFFI3851TWWR/), [IGVFFI8287PFCZ](/sequence-files/IGVFFI8287PFCZ/), [IGVFFI9646SAZO](/sequence-files/IGVFFI9646SAZO/), [IGVFFI1734CSWX](/sequence-files/IGVFFI1734CSWX/), [IGVFFI6051EHGV](/sequence-files/IGVFFI6051EHGV/), [IGVFFI7566GBAL](/sequence-files/IGVFFI7566GBAL/), [IGVFFI1448KYTZ](/sequence-files/IGVFFI1448KYTZ/), [IGVFFI2830OUDU](/sequence-files/IGVFFI2830OUDU/), [IGVFFI2613DASS](/sequence-files/IGVFFI2613DASS/), [IGVFFI0760BYPV](/sequence-files/IGVFFI0760BYPV/), [IGVFFI1166BZPS](/sequence-files/IGVFFI1166BZPS/), [IGVFFI4136FEKU](/sequence-files/IGVFFI4136FEKU/), [IGVFFI3658NCGQ](/sequence-files/IGVFFI3658NCGQ/), [IGVFFI3530LFPI](/sequence-files/IGVFFI3530LFPI/), [IGVFFI0588KREN](/sequence-files/IGVFFI0588KREN/), [IGVFFI4028RQVM](/sequence-files/IGVFFI4028RQVM/), [IGVFFI5768OQOS](/sequence-files/IGVFFI5768OQOS/), [IGVFFI6527UGIB](/sequence-files/IGVFFI6527UGIB/), [IGVFFI8051AMOU](/sequence-files/IGVFFI8051AMOU/), [IGVFFI3825QDEV](/sequence-files/IGVFFI3825QDEV/), [IGVFFI4462SQYP](/sequence-files/IGVFFI4462SQYP/), [IGVFFI5775YFXO](/sequence-files/IGVFFI5775YFXO/), [IGVFFI7273QMDX](/sequence-files/IGVFFI7273QMDX/), [IGVFFI3052URKY](/sequence-files/IGVFFI3052URKY/), [IGVFFI3399IAHG](/sequence-files/IGVFFI3399IAHG/), [IGVFFI8689QHOK](/sequence-files/IGVFFI8689QHOK/), [IGVFFI2552QGVT](/sequence-files/IGVFFI2552QGVT/), [IGVFFI2863GSZO](/sequence-files/IGVFFI2863GSZO/), [IGVFFI5902HDIW](/sequence-files/IGVFFI5902HDIW/), [IGVFFI1192CZMA](/sequence-files/IGVFFI1192CZMA/), [IGVFFI4068RZWC](/sequence-files/IGVFFI4068RZWC/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS3561FSKT/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3561FSKT](/measurement-sets/IGVFDS3561FSKT/) has sequence file(s): [IGVFFI0889MEKX](/sequence-files/IGVFFI0889MEKX/), [IGVFFI3790IBMZ](/sequence-files/IGVFFI3790IBMZ/), [IGVFFI5875UYYV](/sequence-files/IGVFFI5875UYYV/), [IGVFFI0022VIOD](/sequence-files/IGVFFI0022VIOD/), [IGVFFI8986LQYS](/sequence-files/IGVFFI8986LQYS/), [IGVFFI7638OJAS](/sequence-files/IGVFFI7638OJAS/), [IGVFFI0622ZAUE](/sequence-files/IGVFFI0622ZAUE/), [IGVFFI2801ZLNU](/sequence-files/IGVFFI2801ZLNU/), [IGVFFI0727ZNCW](/sequence-files/IGVFFI0727ZNCW/), [IGVFFI4017BJXN](/sequence-files/IGVFFI4017BJXN/), [IGVFFI9065PZZH](/sequence-files/IGVFFI9065PZZH/), [IGVFFI2116SCVI](/sequence-files/IGVFFI2116SCVI/), [IGVFFI2983HFEB](/sequence-files/IGVFFI2983HFEB/), [IGVFFI2234KVEY](/sequence-files/IGVFFI2234KVEY/), [IGVFFI5971ZSND](/sequence-files/IGVFFI5971ZSND/), [IGVFFI6396IJQM](/sequence-files/IGVFFI6396IJQM/), [IGVFFI0423OGGT](/sequence-files/IGVFFI0423OGGT/), [IGVFFI3851TWWR](/sequence-files/IGVFFI3851TWWR/), [IGVFFI8287PFCZ](/sequence-files/IGVFFI8287PFCZ/), [IGVFFI9646SAZO](/sequence-files/IGVFFI9646SAZO/), [IGVFFI1734CSWX](/sequence-files/IGVFFI1734CSWX/), [IGVFFI6051EHGV](/sequence-files/IGVFFI6051EHGV/), [IGVFFI7566GBAL](/sequence-files/IGVFFI7566GBAL/), [IGVFFI1448KYTZ](/sequence-files/IGVFFI1448KYTZ/), [IGVFFI2830OUDU](/sequence-files/IGVFFI2830OUDU/), [IGVFFI2613DASS](/sequence-files/IGVFFI2613DASS/), [IGVFFI0760BYPV](/sequence-files/IGVFFI0760BYPV/), [IGVFFI1166BZPS](/sequence-files/IGVFFI1166BZPS/), [IGVFFI4136FEKU](/sequence-files/IGVFFI4136FEKU/), [IGVFFI3658NCGQ](/sequence-files/IGVFFI3658NCGQ/), [IGVFFI3530LFPI](/sequence-files/IGVFFI3530LFPI/), [IGVFFI0588KREN](/sequence-files/IGVFFI0588KREN/), [IGVFFI4028RQVM](/sequence-files/IGVFFI4028RQVM/), [IGVFFI5768OQOS](/sequence-files/IGVFFI5768OQOS/), [IGVFFI6527UGIB](/sequence-files/IGVFFI6527UGIB/), [IGVFFI8051AMOU](/sequence-files/IGVFFI8051AMOU/), [IGVFFI3825QDEV](/sequence-files/IGVFFI3825QDEV/), [IGVFFI4462SQYP](/sequence-files/IGVFFI4462SQYP/), [IGVFFI5775YFXO](/sequence-files/IGVFFI5775YFXO/), [IGVFFI7273QMDX](/sequence-files/IGVFFI7273QMDX/), [IGVFFI3052URKY](/sequence-files/IGVFFI3052URKY/), [IGVFFI3399IAHG](/sequence-files/IGVFFI3399IAHG/), [IGVFFI8689QHOK](/sequence-files/IGVFFI8689QHOK/), [IGVFFI2552QGVT](/sequence-files/IGVFFI2552QGVT/), [IGVFFI2863GSZO](/sequence-files/IGVFFI2863GSZO/), [IGVFFI5902HDIW](/sequence-files/IGVFFI5902HDIW/), [IGVFFI1192CZMA](/sequence-files/IGVFFI1192CZMA/), [IGVFFI4068RZWC](/sequence-files/IGVFFI4068RZWC/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3561FSKT/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6493PXNX](/in-vitro-systems/IGVFSM6493PXNX/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6493PXNX/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS3561FSKT](/measurement-sets/IGVFDS3561FSKT/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS3561FSKT/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4869FXYY/",
"accession": "IGVFDS4869FXYY",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-Jurkat-PE2_Exp2_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-12-13T08:48:02.639900+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1080XFGV/",
"accession": "IGVFDO1080XFGV",
"aliases": [
"igvf:donor_of_Jurkat"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI0889MEKX/",
"accession": "IGVFFI0889MEKX",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:07:02.542772+00:00",
"file_format": "fastq",
"file_size": 2075636,
"href": "/sequence-files/IGVFFI0889MEKX/@@download/IGVFFI0889MEKX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0fddb1c5-a115-46fa-b130-61eaca59c374/IGVFFI0889MEKX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep3_S3_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3790IBMZ/",
"accession": "IGVFFI3790IBMZ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:11:23.764482+00:00",
"file_format": "fastq",
"file_size": 1799957,
"href": "/sequence-files/IGVFFI3790IBMZ/@@download/IGVFFI3790IBMZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/58742458-52c7-42cb-8253-6baf4e942530/IGVFFI3790IBMZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep10_S10_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5875UYYV/",
"accession": "IGVFFI5875UYYV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:37:17.144087+00:00",
"file_format": "fastq",
"file_size": 9993539,
"href": "/sequence-files/IGVFFI5875UYYV/@@download/IGVFFI5875UYYV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/2034beff-b1b4-4131-9404-71db91abb877/IGVFFI5875UYYV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep7_S7_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0022VIOD/",
"accession": "IGVFFI0022VIOD",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:33:28.607707+00:00",
"file_format": "fastq",
"file_size": 9477292,
"href": "/sequence-files/IGVFFI0022VIOD/@@download/IGVFFI0022VIOD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/29bdc1f9-227d-4804-b1cf-7598e9f4cec5/IGVFFI0022VIOD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep2_S2_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8986LQYS/",
"accession": "IGVFFI8986LQYS",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:09:31.671156+00:00",
"file_format": "fastq",
"file_size": 2037515,
"href": "/sequence-files/IGVFFI8986LQYS/@@download/IGVFFI8986LQYS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c54b56ff-247b-4331-95e6-b893a45be889/IGVFFI8986LQYS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep7_S7_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7638OJAS/",
"accession": "IGVFFI7638OJAS",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:18:55.115702+00:00",
"file_format": "fastq",
"file_size": 6554644,
"href": "/sequence-files/IGVFFI7638OJAS/@@download/IGVFFI7638OJAS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/6259ec3c-c614-442c-b0c5-633ace466899/IGVFFI7638OJAS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep1_S1_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0622ZAUE/",
"accession": "IGVFFI0622ZAUE",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:37:57.172339+00:00",
"file_format": "fastq",
"file_size": 9785287,
"href": "/sequence-files/IGVFFI0622ZAUE/@@download/IGVFFI0622ZAUE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/2ca9c90e-f3c8-4992-8c75-f5821ee6a03b/IGVFFI0622ZAUE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep8_S8_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2801ZLNU/",
"accession": "IGVFFI2801ZLNU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:31:23.159241+00:00",
"file_format": "fastq",
"file_size": 6999029,
"href": "/sequence-files/IGVFFI2801ZLNU/@@download/IGVFFI2801ZLNU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8b2ccdfd-2299-4c01-a0ce-ddbdb2bca893/IGVFFI2801ZLNU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep5_S5_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0727ZNCW/",
"accession": "IGVFFI0727ZNCW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:12:42.121741+00:00",
"file_format": "fastq",
"file_size": 1844074,
"href": "/sequence-files/IGVFFI0727ZNCW/@@download/IGVFFI0727ZNCW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/66d6042d-26b5-47c8-8dcd-a3d4b5bb7398/IGVFFI0727ZNCW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep12_S12_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4017BJXN/",
"accession": "IGVFFI4017BJXN",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:09:54.466894+00:00",
"file_format": "fastq",
"file_size": 1736601,
"href": "/sequence-files/IGVFFI4017BJXN/@@download/IGVFFI4017BJXN.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ac9005f5-1f36-43fc-adeb-4b0163876969/IGVFFI4017BJXN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep12_S12_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9065PZZH/",
"accession": "IGVFFI9065PZZH",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:36:37.538353+00:00",
"file_format": "fastq",
"file_size": 10151341,
"href": "/sequence-files/IGVFFI9065PZZH/@@download/IGVFFI9065PZZH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/fe407572-353e-4073-b1f9-0d3f91b4abf9/IGVFFI9065PZZH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep6_S6_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2116SCVI/",
"accession": "IGVFFI2116SCVI",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:06:45.529927+00:00",
"file_format": "fastq",
"file_size": 2004269,
"href": "/sequence-files/IGVFFI2116SCVI/@@download/IGVFFI2116SCVI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ad6628f4-7f23-45c7-a78e-a2fdef9a370c/IGVFFI2116SCVI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep7_S7_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2983HFEB/",
"accession": "IGVFFI2983HFEB",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:10:09.117912+00:00",
"file_format": "fastq",
"file_size": 2028191,
"href": "/sequence-files/IGVFFI2983HFEB/@@download/IGVFFI2983HFEB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/321a3f86-7d93-4d59-ae53-87bb1b26efaa/IGVFFI2983HFEB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep8_S8_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2234KVEY/",
"accession": "IGVFFI2234KVEY",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:05:29.283740+00:00",
"file_format": "fastq",
"file_size": 1946858,
"href": "/sequence-files/IGVFFI2234KVEY/@@download/IGVFFI2234KVEY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/4f652cb0-806a-4cee-aae8-471668f18a10/IGVFFI2234KVEY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep5_S5_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5971ZSND/",
"accession": "IGVFFI5971ZSND",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:06:06.538502+00:00",
"file_format": "fastq",
"file_size": 1933581,
"href": "/sequence-files/IGVFFI5971ZSND/@@download/IGVFFI5971ZSND.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/bbbd333d-4cf4-4bf6-b299-1871799f653c/IGVFFI5971ZSND.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep6_S6_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6396IJQM/",
"accession": "IGVFFI6396IJQM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:10:46.540924+00:00",
"file_format": "fastq",
"file_size": 1959390,
"href": "/sequence-files/IGVFFI6396IJQM/@@download/IGVFFI6396IJQM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ac04e4ea-8317-44ff-81cc-d77eea96b85d/IGVFFI6396IJQM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep9_S9_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0423OGGT/",
"accession": "IGVFFI0423OGGT",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:34:35.081889+00:00",
"file_format": "fastq",
"file_size": 10266589,
"href": "/sequence-files/IGVFFI0423OGGT/@@download/IGVFFI0423OGGT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/1192c5b3-5e39-41bd-8cf6-0ca6d5d791fa/IGVFFI0423OGGT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep3_S3_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3851TWWR/",
"accession": "IGVFFI3851TWWR",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:33:58.087050+00:00",
"file_format": "fastq",
"file_size": 6573527,
"href": "/sequence-files/IGVFFI3851TWWR/@@download/IGVFFI3851TWWR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0d1b8977-8caf-441f-9dee-cd5f18f5f194/IGVFFI3851TWWR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep9_S9_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8287PFCZ/",
"accession": "IGVFFI8287PFCZ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:08:54.130401+00:00",
"file_format": "fastq",
"file_size": 2066198,
"href": "/sequence-files/IGVFFI8287PFCZ/@@download/IGVFFI8287PFCZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f6e55f1e-ea16-490b-9b3b-27145b40fd45/IGVFFI8287PFCZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep6_S6_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9646SAZO/",
"accession": "IGVFFI9646SAZO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:33:20.311727+00:00",
"file_format": "fastq",
"file_size": 6807309,
"href": "/sequence-files/IGVFFI9646SAZO/@@download/IGVFFI9646SAZO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/5115e044-e115-40ec-aea5-3c825150e426/IGVFFI9646SAZO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep8_S8_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1734CSWX/",
"accession": "IGVFFI1734CSWX",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:05:08.089609+00:00",
"file_format": "fastq",
"file_size": 1940666,
"href": "/sequence-files/IGVFFI1734CSWX/@@download/IGVFFI1734CSWX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8e11d74f-25c7-485f-a7e0-254bc6d9f4a7/IGVFFI1734CSWX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep1_S1_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6051EHGV/",
"accession": "IGVFFI6051EHGV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:07:25.853470+00:00",
"file_format": "fastq",
"file_size": 2046229,
"href": "/sequence-files/IGVFFI6051EHGV/@@download/IGVFFI6051EHGV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/7d25b907-3ed5-47fa-aa72-28273240631e/IGVFFI6051EHGV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep8_S8_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7566GBAL/",
"accession": "IGVFFI7566GBAL",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:32:01.035760+00:00",
"file_format": "fastq",
"file_size": 6996080,
"href": "/sequence-files/IGVFFI7566GBAL/@@download/IGVFFI7566GBAL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/9580e4e9-5f86-49f5-b6b6-18b5759cd545/IGVFFI7566GBAL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep6_S6_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1448KYTZ/",
"accession": "IGVFFI1448KYTZ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:02:23.607253+00:00",
"file_format": "fastq",
"file_size": 1822962,
"href": "/sequence-files/IGVFFI1448KYTZ/@@download/IGVFFI1448KYTZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/38a84881-f934-414e-a3c5-63d4f778f65b/IGVFFI1448KYTZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep1_S1_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2830OUDU/",
"accession": "IGVFFI2830OUDU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:12:01.249737+00:00",
"file_format": "fastq",
"file_size": 1860691,
"href": "/sequence-files/IGVFFI2830OUDU/@@download/IGVFFI2830OUDU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/b95714de-26db-4b0a-9874-eb88afd50bea/IGVFFI2830OUDU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep11_S11_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2613DASS/",
"accession": "IGVFFI2613DASS",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:06:04.569116+00:00",
"file_format": "fastq",
"file_size": 1971600,
"href": "/sequence-files/IGVFFI2613DASS/@@download/IGVFFI2613DASS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/b03f8124-357d-4209-b266-2b0c9a92fb9d/IGVFFI2613DASS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep2_S2_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0760BYPV/",
"accession": "IGVFFI0760BYPV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:34:35.612248+00:00",
"file_format": "fastq",
"file_size": 6030130,
"href": "/sequence-files/IGVFFI0760BYPV/@@download/IGVFFI0760BYPV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/1f02d721-682e-4316-bb00-4b036cb68194/IGVFFI0760BYPV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep10_S10_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1166BZPS/",
"accession": "IGVFFI1166BZPS",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:35:18.414446+00:00",
"file_format": "fastq",
"file_size": 10193936,
"href": "/sequence-files/IGVFFI1166BZPS/@@download/IGVFFI1166BZPS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/04ec0a22-3f48-4c64-b9df-7674f0258cf6/IGVFFI1166BZPS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep4_S4_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4136FEKU/",
"accession": "IGVFFI4136FEKU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:32:42.600313+00:00",
"file_format": "fastq",
"file_size": 6940482,
"href": "/sequence-files/IGVFFI4136FEKU/@@download/IGVFFI4136FEKU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/bac652d1-9463-4e51-8fe5-9fcd5cd3bfff/IGVFFI4136FEKU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep7_S7_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3658NCGQ/",
"accession": "IGVFFI3658NCGQ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:35:13.313223+00:00",
"file_format": "fastq",
"file_size": 6269100,
"href": "/sequence-files/IGVFFI3658NCGQ/@@download/IGVFFI3658NCGQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ee9e30c7-3361-4a0a-9f38-190b8c4da461/IGVFFI3658NCGQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep11_S11_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3530LFPI/",
"accession": "IGVFFI3530LFPI",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:40:40.667342+00:00",
"file_format": "fastq",
"file_size": 9001291,
"href": "/sequence-files/IGVFFI3530LFPI/@@download/IGVFFI3530LFPI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0fe278f7-9396-4e3c-91e9-e537060441eb/IGVFFI3530LFPI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep12_S12_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0588KREN/",
"accession": "IGVFFI0588KREN",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:08:02.979119+00:00",
"file_format": "fastq",
"file_size": 1916894,
"href": "/sequence-files/IGVFFI0588KREN/@@download/IGVFFI0588KREN.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8a2fdac2-8d03-4e48-94dc-b24784081d89/IGVFFI0588KREN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep9_S9_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4028RQVM/",
"accession": "IGVFFI4028RQVM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:39:19.448524+00:00",
"file_format": "fastq",
"file_size": 8651751,
"href": "/sequence-files/IGVFFI4028RQVM/@@download/IGVFFI4028RQVM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/671cb9b4-a47b-424d-91aa-834e035b073d/IGVFFI4028RQVM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep10_S10_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5768OQOS/",
"accession": "IGVFFI5768OQOS",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:29:10.154306+00:00",
"file_format": "fastq",
"file_size": 6637711,
"href": "/sequence-files/IGVFFI5768OQOS/@@download/IGVFFI5768OQOS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d58c09ec-2c97-4c28-b5cf-1d34bd010a97/IGVFFI5768OQOS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep2_S2_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6527UGIB/",
"accession": "IGVFFI6527UGIB",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:35:51.104542+00:00",
"file_format": "fastq",
"file_size": 6225880,
"href": "/sequence-files/IGVFFI6527UGIB/@@download/IGVFFI6527UGIB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8c4da6dc-4d90-4f0a-b16e-dfcd39325f01/IGVFFI6527UGIB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep12_S12_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8051AMOU/",
"accession": "IGVFFI8051AMOU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:07:39.632372+00:00",
"file_format": "fastq",
"file_size": 2119120,
"href": "/sequence-files/IGVFFI8051AMOU/@@download/IGVFFI8051AMOU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8646c949-5fa0-41fe-9d59-db747a57536a/IGVFFI8051AMOU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep4_S4_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3825QDEV/",
"accession": "IGVFFI3825QDEV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:30:45.545311+00:00",
"file_format": "fastq",
"file_size": 7144633,
"href": "/sequence-files/IGVFFI3825QDEV/@@download/IGVFFI3825QDEV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/3634b730-6fa7-4446-b8e9-7c1406f1d6fd/IGVFFI3825QDEV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep4_S4_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4462SQYP/",
"accession": "IGVFFI4462SQYP",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:39:58.690838+00:00",
"file_format": "fastq",
"file_size": 9008302,
"href": "/sequence-files/IGVFFI4462SQYP/@@download/IGVFFI4462SQYP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/a93cf7b6-756f-465c-b837-f588944d583f/IGVFFI4462SQYP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep11_S11_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5775YFXO/",
"accession": "IGVFFI5775YFXO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:08:40.087992+00:00",
"file_format": "fastq",
"file_size": 1717259,
"href": "/sequence-files/IGVFFI5775YFXO/@@download/IGVFFI5775YFXO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/5351f223-9231-40b3-ae6c-5e3e9e5bb647/IGVFFI5775YFXO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep10_S10_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7273QMDX/",
"accession": "IGVFFI7273QMDX",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:38:36.604695+00:00",
"file_format": "fastq",
"file_size": 9455360,
"href": "/sequence-files/IGVFFI7273QMDX/@@download/IGVFFI7273QMDX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/9fa0bda2-486d-41e7-b131-289ffdfadc06/IGVFFI7273QMDX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep9_S9_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3052URKY/",
"accession": "IGVFFI3052URKY",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:09:17.385588+00:00",
"file_format": "fastq",
"file_size": 1798043,
"href": "/sequence-files/IGVFFI3052URKY/@@download/IGVFFI3052URKY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/839cbbbd-45ac-4101-9a8f-406ddcee5a77/IGVFFI3052URKY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep11_S11_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3399IAHG/",
"accession": "IGVFFI3399IAHG",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:04:51.991539+00:00",
"file_format": "fastq",
"file_size": 2068710,
"href": "/sequence-files/IGVFFI3399IAHG/@@download/IGVFFI3399IAHG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/2cebd792-30b8-40c6-899a-61e21ea33063/IGVFFI3399IAHG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep4_S4_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8689QHOK/",
"accession": "IGVFFI8689QHOK",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:30:07.599892+00:00",
"file_format": "fastq",
"file_size": 7148783,
"href": "/sequence-files/IGVFFI8689QHOK/@@download/IGVFFI8689QHOK.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/3325e9cb-f1dd-4799-bc3d-9987098eed99/IGVFFI8689QHOK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep3_S3_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2552QGVT/",
"accession": "IGVFFI2552QGVT",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:32:29.936086+00:00",
"file_format": "fastq",
"file_size": 9403459,
"href": "/sequence-files/IGVFFI2552QGVT/@@download/IGVFFI2552QGVT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/6800106a-0cc0-4fdb-9c7b-6b18ebd36e7d/IGVFFI2552QGVT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep1_S1_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2863GSZO/",
"accession": "IGVFFI2863GSZO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:03:19.135171+00:00",
"file_format": "fastq",
"file_size": 1884932,
"href": "/sequence-files/IGVFFI2863GSZO/@@download/IGVFFI2863GSZO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/b3c323b3-7bfd-4198-845a-fa7b5083f1c6/IGVFFI2863GSZO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep2_S2_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5902HDIW/",
"accession": "IGVFFI5902HDIW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:08:17.022525+00:00",
"file_format": "fastq",
"file_size": 2056523,
"href": "/sequence-files/IGVFFI5902HDIW/@@download/IGVFFI5902HDIW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d210b20d-4fa4-4917-806a-81a76bee12d9/IGVFFI5902HDIW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep5_S5_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1192CZMA/",
"accession": "IGVFFI1192CZMA",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:04:14.943709+00:00",
"file_format": "fastq",
"file_size": 1985287,
"href": "/sequence-files/IGVFFI1192CZMA/@@download/IGVFFI1192CZMA.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d82055b9-e62b-4626-b156-a3491c3ddecd/IGVFFI1192CZMA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep3_S3_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4068RZWC/",
"accession": "IGVFFI4068RZWC",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:35:57.859229+00:00",
"file_format": "fastq",
"file_size": 10019006,
"href": "/sequence-files/IGVFFI4068RZWC/@@download/IGVFFI4068RZWC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/dd477390-cd62-4ec2-9c02-c05993dbca5f/IGVFFI4068RZWC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinA-PCRrep5_S5_R2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS6299IJHG/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:08:14.263327+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM6493PXNX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6493PXNX",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2385DHZO/",
"accession": "IGVFDS2385DHZO",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002796/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:Jurkat"
],
"status": "released",
"summary": "Jurkat",
"term_name": "Jurkat"
}
],
"status": "released",
"summary": "Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-13T09:18:55.115702+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "4ccd7492-29b5-4475-8921-861efcf80a2d"
}