IGVFDS3537WUVG

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS3537WUVG/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS3537WUVG",
10    "aliases": [
11        "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input_AmpliconSequencing"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003661/",
15        "assay_slims": [
16            "CRISPR screens"
17        ],
18        "status": "released",
19        "term_name": "in vitro CRISPR screen using flow cytometry"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "mismatched status",
25                "detail": "Released in vitro system [IGVFSM4195NXPO](/in-vitro-systems/IGVFSM4195NXPO/) has in progress subobject construct library set [IGVFDS6982DESN](/construct-library-sets/IGVFDS6982DESN/).",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_item_status",
29                "path": "/in-vitro-systems/IGVFSM4195NXPO/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "In vitro system [IGVFSM4195NXPO](/in-vitro-systems/IGVFSM4195NXPO/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_sample_missing_publication",
37                "path": "/in-vitro-systems/IGVFSM4195NXPO/"
38            },
39            {
40                "category": "missing publication",
41                "detail": "Measurement set [IGVFDS3537WUVG](/measurement-sets/IGVFDS3537WUVG/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_file_set_missing_publication",
45                "path": "/measurement-sets/IGVFDS3537WUVG/"
46            },
47            {
48                "category": "missing sequencing kit",
49                "detail": "Measurement set [IGVFDS3537WUVG](/measurement-sets/IGVFDS3537WUVG/) has sequence file(s) [IGVFFI7619HEVP](/sequence-files/IGVFFI7619HEVP/), [IGVFFI6632PPHP](/sequence-files/IGVFFI6632PPHP/), [IGVFFI5784YKLG](/sequence-files/IGVFFI5784YKLG/), [IGVFFI1175VVIB](/sequence-files/IGVFFI1175VVIB/), [IGVFFI2223MQED](/sequence-files/IGVFFI2223MQED/), [IGVFFI3491EPZB](/sequence-files/IGVFFI3491EPZB/), [IGVFFI6793HDYT](/sequence-files/IGVFFI6793HDYT/), [IGVFFI8834QEDN](/sequence-files/IGVFFI8834QEDN/), [IGVFFI7468XKNL](/sequence-files/IGVFFI7468XKNL/), [IGVFFI9846EYVT](/sequence-files/IGVFFI9846EYVT/), [IGVFFI5416JNYK](/sequence-files/IGVFFI5416JNYK/), [IGVFFI1772XYYJ](/sequence-files/IGVFFI1772XYYJ/), [IGVFFI3189KJRI](/sequence-files/IGVFFI3189KJRI/), [IGVFFI5568VQHI](/sequence-files/IGVFFI5568VQHI/), [IGVFFI1404KPBA](/sequence-files/IGVFFI1404KPBA/), [IGVFFI2877ROXQ](/sequence-files/IGVFFI2877ROXQ/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_inconsistent_sequencing_kit",
53                "path": "/measurement-sets/IGVFDS3537WUVG/"
54            },
55            {
56                "category": "missing sequence specification",
57                "detail": "Measurement set [IGVFDS3537WUVG](/measurement-sets/IGVFDS3537WUVG/) has sequence file(s): [IGVFFI7619HEVP](/sequence-files/IGVFFI7619HEVP/), [IGVFFI6632PPHP](/sequence-files/IGVFFI6632PPHP/), [IGVFFI5784YKLG](/sequence-files/IGVFFI5784YKLG/), [IGVFFI1175VVIB](/sequence-files/IGVFFI1175VVIB/), [IGVFFI2223MQED](/sequence-files/IGVFFI2223MQED/), [IGVFFI3491EPZB](/sequence-files/IGVFFI3491EPZB/), [IGVFFI6793HDYT](/sequence-files/IGVFFI6793HDYT/), [IGVFFI8834QEDN](/sequence-files/IGVFFI8834QEDN/), [IGVFFI7468XKNL](/sequence-files/IGVFFI7468XKNL/), [IGVFFI9846EYVT](/sequence-files/IGVFFI9846EYVT/), [IGVFFI5416JNYK](/sequence-files/IGVFFI5416JNYK/), [IGVFFI1772XYYJ](/sequence-files/IGVFFI1772XYYJ/), [IGVFFI3189KJRI](/sequence-files/IGVFFI3189KJRI/), [IGVFFI5568VQHI](/sequence-files/IGVFFI5568VQHI/), [IGVFFI1404KPBA](/sequence-files/IGVFFI1404KPBA/), [IGVFFI2877ROXQ](/sequence-files/IGVFFI2877ROXQ/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_missing_seqspec",
61                "path": "/measurement-sets/IGVFDS3537WUVG/"
62            }
63        ],
64        "NOT_COMPLIANT": [
65            {
66                "category": "missing control for",
67                "detail": "Measurement set [IGVFDS3537WUVG](/measurement-sets/IGVFDS3537WUVG/) has no `control_for`. The `control_file_sets` should be patched on the file sets it serves as a control for and this property, `control_for`, will be reverse calculated. File sets that specify a control type are expected to be a control for other file sets.",
68                "level": 50,
69                "level_name": "NOT_COMPLIANT",
70                "name": "audit_control_for_control_type",
71                "path": "/measurement-sets/IGVFDS3537WUVG/"
72            }
73        ],
74        "WARNING": [
75            {
76                "category": "missing auxiliary set",
77                "detail": "Measurement set [IGVFDS3537WUVG](/measurement-sets/IGVFDS3537WUVG/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
78                "level": 40,
79                "level_name": "WARNING",
80                "name": "audit_missing_auxiliary_set",
81                "path": "/measurement-sets/IGVFDS3537WUVG/"
82            },
83            {
84                "category": "missing targeted genes",
85                "detail": "Measurement set [IGVFDS3537WUVG](/measurement-sets/IGVFDS3537WUVG/) has no `targeted_genes`. ChIP-seq and CRISPR flow cytometry assays are expected to specify targeted gene(s).",
86                "level": 40,
87                "level_name": "WARNING",
88                "name": "audit_targeted_genes",
89                "path": "/measurement-sets/IGVFDS3537WUVG/"
90            }
91        ]
92    },
93    "award": {
94        "@id": "/awards/HG011972/",
95        "component": "functional characterization",
96        "contact_pi": {
97            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
98            "title": "Jesse Engreitz"
99        },
100        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
101    },
102    "construct_library_sets": [
103        {
104            "@id": "/construct-library-sets/IGVFDS6982DESN/",
105            "accession": "IGVFDS6982DESN",
106            "file_set_type": "guide library",
107            "status": "in progress",
108            "summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
109        }
110    ],
111    "control_file_sets": [
112        {
113            "@id": "/measurement-sets/IGVFDS5864UGFT/",
114            "accession": "IGVFDS5864UGFT",
115            "aliases": [
116                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-THP1-PE2_Exp2_NegControl_AmpliconSequencing"
117            ],
118            "status": "released"
119        }
120    ],
121    "control_for": [],
122    "control_type": "unsorted FACS input",
123    "creation_timestamp": "2023-11-30T22:50:03.958834+00:00",
124    "donors": [
125        {
126            "@id": "/human-donors/IGVFDO7359LVPI/",
127            "accession": "IGVFDO7359LVPI",
128            "aliases": [
129                "igvf:donor_of_THP1"
130            ],
131            "sex": "male",
132            "status": "released",
133            "taxa": "Homo sapiens"
134        }
135    ],
136    "externally_hosted": false,
137    "file_set_type": "experimental data",
138    "files": [
139        {
140            "@id": "/sequence-files/IGVFFI7619HEVP/",
141            "accession": "IGVFFI7619HEVP",
142            "aliases": [
143                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep4_I2"
144            ],
145            "content_type": "reads",
146            "controlled_access": false,
147            "creation_timestamp": "2023-12-05T23:32:17.376626+00:00",
148            "file_format": "fastq",
149            "file_size": 1308850,
150            "href": "/sequence-files/IGVFFI7619HEVP/@@download/IGVFFI7619HEVP.fastq.gz",
151            "s3_uri": "s3://igvf-files/2023/12/05/b429a5ac-2869-4780-a81f-643c8a2dbcea/IGVFFI7619HEVP.fastq.gz",
152            "sequencing_platform": {
153                "@id": "/platform-terms/EFO_0008566/",
154                "status": "released",
155                "term_name": "Illumina NextSeq 550"
156            },
157            "status": "released",
158            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep4_S418_I2_001.fastq.gz",
159            "upload_status": "validated"
160        },
161        {
162            "@id": "/sequence-files/IGVFFI6632PPHP/",
163            "accession": "IGVFFI6632PPHP",
164            "aliases": [
165                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep3_R2"
166            ],
167            "content_type": "reads",
168            "controlled_access": false,
169            "creation_timestamp": "2023-12-05T23:31:59.625119+00:00",
170            "file_format": "fastq",
171            "file_size": 5599334,
172            "href": "/sequence-files/IGVFFI6632PPHP/@@download/IGVFFI6632PPHP.fastq.gz",
173            "s3_uri": "s3://igvf-files/2023/12/05/d04451e3-aa2e-425f-ac17-c3b93f0772fe/IGVFFI6632PPHP.fastq.gz",
174            "sequencing_platform": {
175                "@id": "/platform-terms/EFO_0008566/",
176                "status": "released",
177                "term_name": "Illumina NextSeq 550"
178            },
179            "status": "released",
180            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep3_S409_R2_001.fastq.gz",
181            "upload_status": "validated"
182        },
183        {
184            "@id": "/sequence-files/IGVFFI5784YKLG/",
185            "accession": "IGVFFI5784YKLG",
186            "aliases": [
187                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep2_R2"
188            ],
189            "content_type": "reads",
190            "controlled_access": false,
191            "creation_timestamp": "2023-12-05T23:31:25.645550+00:00",
192            "file_format": "fastq",
193            "file_size": 5545866,
194            "href": "/sequence-files/IGVFFI5784YKLG/@@download/IGVFFI5784YKLG.fastq.gz",
195            "s3_uri": "s3://igvf-files/2023/12/05/0d7cbdad-9709-453c-ae69-c8638e9fcbd1/IGVFFI5784YKLG.fastq.gz",
196            "sequencing_platform": {
197                "@id": "/platform-terms/EFO_0008566/",
198                "status": "released",
199                "term_name": "Illumina NextSeq 550"
200            },
201            "status": "released",
202            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep2_S400_R2_001.fastq.gz",
203            "upload_status": "validated"
204        },
205        {
206            "@id": "/sequence-files/IGVFFI1175VVIB/",
207            "accession": "IGVFFI1175VVIB",
208            "aliases": [
209                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep1_R2"
210            ],
211            "content_type": "reads",
212            "controlled_access": false,
213            "creation_timestamp": "2023-12-05T23:30:50.692657+00:00",
214            "file_format": "fastq",
215            "file_size": 5933724,
216            "href": "/sequence-files/IGVFFI1175VVIB/@@download/IGVFFI1175VVIB.fastq.gz",
217            "s3_uri": "s3://igvf-files/2023/12/05/447b5d57-8c9c-4beb-9ea6-7dcfda43a0da/IGVFFI1175VVIB.fastq.gz",
218            "sequencing_platform": {
219                "@id": "/platform-terms/EFO_0008566/",
220                "status": "released",
221                "term_name": "Illumina NextSeq 550"
222            },
223            "status": "released",
224            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep1_S391_R2_001.fastq.gz",
225            "upload_status": "validated"
226        },
227        {
228            "@id": "/sequence-files/IGVFFI2223MQED/",
229            "accession": "IGVFFI2223MQED",
230            "aliases": [
231                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep4_I1"
232            ],
233            "content_type": "reads",
234            "controlled_access": false,
235            "creation_timestamp": "2023-12-05T23:32:08.401148+00:00",
236            "file_format": "fastq",
237            "file_size": 1317426,
238            "href": "/sequence-files/IGVFFI2223MQED/@@download/IGVFFI2223MQED.fastq.gz",
239            "s3_uri": "s3://igvf-files/2023/12/05/ad6b4d57-9131-4960-bc01-42194080c4e4/IGVFFI2223MQED.fastq.gz",
240            "sequencing_platform": {
241                "@id": "/platform-terms/EFO_0008566/",
242                "status": "released",
243                "term_name": "Illumina NextSeq 550"
244            },
245            "status": "released",
246            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep4_S418_I1_001.fastq.gz",
247            "upload_status": "validated"
248        },
249        {
250            "@id": "/sequence-files/IGVFFI3491EPZB/",
251            "accession": "IGVFFI3491EPZB",
252            "aliases": [
253                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep1_I1"
254            ],
255            "content_type": "reads",
256            "controlled_access": false,
257            "creation_timestamp": "2023-12-05T23:30:24.571542+00:00",
258            "file_format": "fastq",
259            "file_size": 1383969,
260            "href": "/sequence-files/IGVFFI3491EPZB/@@download/IGVFFI3491EPZB.fastq.gz",
261            "s3_uri": "s3://igvf-files/2023/12/05/842c3821-34e6-4984-8bb5-c9a921cdabab/IGVFFI3491EPZB.fastq.gz",
262            "sequencing_platform": {
263                "@id": "/platform-terms/EFO_0008566/",
264                "status": "released",
265                "term_name": "Illumina NextSeq 550"
266            },
267            "status": "released",
268            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep1_S391_I1_001.fastq.gz",
269            "upload_status": "validated"
270        },
271        {
272            "@id": "/sequence-files/IGVFFI6793HDYT/",
273            "accession": "IGVFFI6793HDYT",
274            "aliases": [
275                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep2_I1"
276            ],
277            "content_type": "reads",
278            "controlled_access": false,
279            "creation_timestamp": "2023-12-05T23:30:59.368879+00:00",
280            "file_format": "fastq",
281            "file_size": 1227889,
282            "href": "/sequence-files/IGVFFI6793HDYT/@@download/IGVFFI6793HDYT.fastq.gz",
283            "s3_uri": "s3://igvf-files/2023/12/05/76a0e2ad-e0f3-44c3-a933-27bd8245d319/IGVFFI6793HDYT.fastq.gz",
284            "sequencing_platform": {
285                "@id": "/platform-terms/EFO_0008566/",
286                "status": "released",
287                "term_name": "Illumina NextSeq 550"
288            },
289            "status": "released",
290            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep2_S400_I1_001.fastq.gz",
291            "upload_status": "validated"
292        },
293        {
294            "@id": "/sequence-files/IGVFFI8834QEDN/",
295            "accession": "IGVFFI8834QEDN",
296            "aliases": [
297                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep4_R2"
298            ],
299            "content_type": "reads",
300            "controlled_access": false,
301            "creation_timestamp": "2023-12-05T23:32:34.898738+00:00",
302            "file_format": "fastq",
303            "file_size": 5577570,
304            "href": "/sequence-files/IGVFFI8834QEDN/@@download/IGVFFI8834QEDN.fastq.gz",
305            "s3_uri": "s3://igvf-files/2023/12/05/5adc6a35-c9ec-4ad7-8b55-f4d6eae232bc/IGVFFI8834QEDN.fastq.gz",
306            "sequencing_platform": {
307                "@id": "/platform-terms/EFO_0008566/",
308                "status": "released",
309                "term_name": "Illumina NextSeq 550"
310            },
311            "status": "released",
312            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep4_S418_R2_001.fastq.gz",
313            "upload_status": "validated"
314        },
315        {
316            "@id": "/sequence-files/IGVFFI7468XKNL/",
317            "accession": "IGVFFI7468XKNL",
318            "aliases": [
319                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep4_R1"
320            ],
321            "content_type": "reads",
322            "controlled_access": false,
323            "creation_timestamp": "2023-12-05T23:32:26.177174+00:00",
324            "file_format": "fastq",
325            "file_size": 4492301,
326            "href": "/sequence-files/IGVFFI7468XKNL/@@download/IGVFFI7468XKNL.fastq.gz",
327            "s3_uri": "s3://igvf-files/2023/12/05/50971596-d453-45fa-a10e-3d1d6ca3916b/IGVFFI7468XKNL.fastq.gz",
328            "sequencing_platform": {
329                "@id": "/platform-terms/EFO_0008566/",
330                "status": "released",
331                "term_name": "Illumina NextSeq 550"
332            },
333            "status": "released",
334            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep4_S418_R1_001.fastq.gz",
335            "upload_status": "validated"
336        },
337        {
338            "@id": "/sequence-files/IGVFFI9846EYVT/",
339            "accession": "IGVFFI9846EYVT",
340            "aliases": [
341                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep1_R1"
342            ],
343            "content_type": "reads",
344            "controlled_access": false,
345            "creation_timestamp": "2023-12-05T23:30:41.952912+00:00",
346            "file_format": "fastq",
347            "file_size": 4733839,
348            "href": "/sequence-files/IGVFFI9846EYVT/@@download/IGVFFI9846EYVT.fastq.gz",
349            "s3_uri": "s3://igvf-files/2023/12/05/cdfa30b1-42ba-44af-a789-2c193b99f1cf/IGVFFI9846EYVT.fastq.gz",
350            "sequencing_platform": {
351                "@id": "/platform-terms/EFO_0008566/",
352                "status": "released",
353                "term_name": "Illumina NextSeq 550"
354            },
355            "status": "released",
356            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep1_S391_R1_001.fastq.gz",
357            "upload_status": "validated"
358        },
359        {
360            "@id": "/sequence-files/IGVFFI5416JNYK/",
361            "accession": "IGVFFI5416JNYK",
362            "aliases": [
363                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep3_R1"
364            ],
365            "content_type": "reads",
366            "controlled_access": false,
367            "creation_timestamp": "2023-12-05T23:31:51.560278+00:00",
368            "file_format": "fastq",
369            "file_size": 4518665,
370            "href": "/sequence-files/IGVFFI5416JNYK/@@download/IGVFFI5416JNYK.fastq.gz",
371            "s3_uri": "s3://igvf-files/2023/12/05/97872465-1cb6-47d5-ad84-28cf80bb72cf/IGVFFI5416JNYK.fastq.gz",
372            "sequencing_platform": {
373                "@id": "/platform-terms/EFO_0008566/",
374                "status": "released",
375                "term_name": "Illumina NextSeq 550"
376            },
377            "status": "released",
378            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep3_S409_R1_001.fastq.gz",
379            "upload_status": "validated"
380        },
381        {
382            "@id": "/sequence-files/IGVFFI1772XYYJ/",
383            "accession": "IGVFFI1772XYYJ",
384            "aliases": [
385                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep3_I2"
386            ],
387            "content_type": "reads",
388            "controlled_access": false,
389            "creation_timestamp": "2023-12-05T23:31:42.914315+00:00",
390            "file_format": "fastq",
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406            "aliases": [
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424        },
425        {
426            "@id": "/sequence-files/IGVFFI5568VQHI/",
427            "accession": "IGVFFI5568VQHI",
428            "aliases": [
429                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep1_I2"
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431            "content_type": "reads",
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433            "creation_timestamp": "2023-12-05T23:30:33.263202+00:00",
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446        },
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448            "@id": "/sequence-files/IGVFFI1404KPBA/",
449            "accession": "IGVFFI1404KPBA",
450            "aliases": [
451                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep3_I1"
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467            "upload_status": "validated"
468        },
469        {
470            "@id": "/sequence-files/IGVFFI2877ROXQ/",
471            "accession": "IGVFFI2877ROXQ",
472            "aliases": [
473                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input-PCRrep2_R1"
474            ],
475            "content_type": "reads",
476            "controlled_access": false,
477            "creation_timestamp": "2023-12-05T23:31:16.908746+00:00",
478            "file_format": "fastq",
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482            "sequencing_platform": {
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484                "status": "released",
485                "term_name": "Illumina NextSeq 550"
486            },
487            "status": "released",
488            "submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep7-BinAll-PCRrep2_S400_R1_001.fastq.gz",
489            "upload_status": "validated"
490        }
491    ],
492    "input_for": [
493        "/analysis-sets/IGVFDS3423PSID/"
494    ],
495    "lab": {
496        "@id": "/labs/jesse-engreitz/",
497        "title": "Jesse Engreitz, Stanford"
498    },
499    "notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
500    "preferred_assay_title": "Variant-EFFECTS",
501    "protocols": [
502        "https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
503    ],
504    "release_timestamp": "2023-12-20T23:06:22.085327+00:00",
505    "samples": [
506        {
507            "@id": "/in-vitro-systems/IGVFSM4195NXPO/",
508            "@type": [
509                "InVitroSystem",
510                "Biosample",
511                "Sample",
512                "Item"
513            ],
514            "accession": "IGVFSM4195NXPO",
515            "aliases": [
516                "jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input"
517            ],
518            "classifications": [
519                "cell line"
520            ],
521            "institutional_certificates": [],
522            "modifications": [
523                {
524                    "@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
525                    "modality": "prime editing",
526                    "status": "released"
527                }
528            ],
529            "sample_terms": [
530                {
531                    "@id": "/sample-terms/EFO_0001253/",
532                    "@type": [
533                        "SampleTerm",
534                        "OntologyTerm",
535                        "Item"
536                    ],
537                    "aliases": [
538                        "igvf:THP-1"
539                    ],
540                    "status": "released",
541                    "summary": "THP-1",
542                    "term_name": "THP-1"
543                }
544            ],
545            "status": "released",
546            "summary": "Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
547            "taxa": "Homo sapiens"
548        }
549    ],
550    "schema_version": "26",
551    "status": "released",
552    "submitted_by": {
553        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
554        "title": "Michael Montgomery"
555    },
556    "submitted_files_timestamp": "2023-12-05T23:30:24.571542+00:00",
557    "summary": "unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
558    "uuid": "a5026eae-58c6-424e-8eab-3683d3750fd8"
559}