Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS3520MQEA
IGVFDS3520MQEA
preview
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X036_G5_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1553LZUF
fastq
reads
I1
1
Illumina NovaSeq 6000
H5VM5DSX7
1
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1647NAPT
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
H5VM5DSX7
1
3.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9383PCKM
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
H5VM5DSX7
1
6.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9509OFVK
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
H5VM5DSX7
1
6.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4264GFJZ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0877AIRF
igvf:corces_donor_BANN0417
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO2031ESZX
igvf:corces_donor_BANN1037
female
Homo sapiens
IGVFDO2127ZJPS
igvf:corces_donor_BANN1560
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4015EJFT
igvf:corces_donor_BANN0526
male
Homo sapiens
IGVFDO4103FHPT
igvf:corces_donor_BANN9702
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO6013FYCW
igvf:corces_donor_BANN0912
male
Homo sapiens
IGVFDO7095OCLJ
igvf:corces_donor_BANN9917
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1696QREL
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X036_G5_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF