{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3511LRHY/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3511LRHY",
"aliases": [
"igvf:corces_measurementSet_RP029_G4_ATAC"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002762/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-nucleus ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7754VJKM](/human-donors/IGVFDO7754VJKM/) has in progress subobject phenotypic feature [7e56d341-7311-4c86-a7ab-923358072a1e](/phenotypic-features/7e56d341-7311-4c86-a7ab-923358072a1e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7754VJKM/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7754VJKM](/human-donors/IGVFDO7754VJKM/) has in progress subobject phenotypic feature [d4c090b4-2024-4a9b-8898-a15945597fdd](/phenotypic-features/d4c090b4-2024-4a9b-8898-a15945597fdd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7754VJKM/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7754VJKM](/human-donors/IGVFDO7754VJKM/) has in progress subobject phenotypic feature [c84b99ad-816e-42a4-b195-b58aba45e6e0](/phenotypic-features/c84b99ad-816e-42a4-b195-b58aba45e6e0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7754VJKM/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7754VJKM](/human-donors/IGVFDO7754VJKM/) has in progress subobject phenotypic feature [3591f078-85a7-42cd-bcf1-34195019c048](/phenotypic-features/3591f078-85a7-42cd-bcf1-34195019c048/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7754VJKM/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7754VJKM](/human-donors/IGVFDO7754VJKM/) has in progress subobject phenotypic feature [a27c1605-198a-40ed-9af5-e16f902dcf87](/phenotypic-features/a27c1605-198a-40ed-9af5-e16f902dcf87/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7754VJKM/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7754VJKM](/human-donors/IGVFDO7754VJKM/) has in progress subobject phenotypic feature [2684a323-af23-48b9-b2ae-7252b9924672](/phenotypic-features/2684a323-af23-48b9-b2ae-7252b9924672/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7754VJKM/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6380POHE](/human-donors/IGVFDO6380POHE/) has in progress subobject phenotypic feature [93b9663b-8d12-4847-b578-798d6d08a5d7](/phenotypic-features/93b9663b-8d12-4847-b578-798d6d08a5d7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6380POHE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6380POHE](/human-donors/IGVFDO6380POHE/) has in progress subobject phenotypic feature [b108288d-1ef0-4234-9b6b-10c5011f2d3e](/phenotypic-features/b108288d-1ef0-4234-9b6b-10c5011f2d3e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6380POHE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6380POHE](/human-donors/IGVFDO6380POHE/) has in progress subobject phenotypic feature [8790c6f7-88f2-4fb1-ac9c-edba4df8ee68](/phenotypic-features/8790c6f7-88f2-4fb1-ac9c-edba4df8ee68/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6380POHE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6380POHE](/human-donors/IGVFDO6380POHE/) has in progress subobject phenotypic feature [5cb28322-2d6b-409f-950e-f6b78c71b3c5](/phenotypic-features/5cb28322-2d6b-409f-950e-f6b78c71b3c5/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6380POHE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6380POHE](/human-donors/IGVFDO6380POHE/) has in progress subobject phenotypic feature [74a7866d-ae30-4c3c-87c8-e6ee465cbb92](/phenotypic-features/74a7866d-ae30-4c3c-87c8-e6ee465cbb92/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6380POHE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9236YUAT](/human-donors/IGVFDO9236YUAT/) has in progress subobject phenotypic feature [45dc979b-555f-4b01-8d0f-a743d2314876](/phenotypic-features/45dc979b-555f-4b01-8d0f-a743d2314876/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9236YUAT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9236YUAT](/human-donors/IGVFDO9236YUAT/) has in progress subobject phenotypic feature [3722891d-0d84-4ede-8520-3db83e7a6b16](/phenotypic-features/3722891d-0d84-4ede-8520-3db83e7a6b16/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9236YUAT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9236YUAT](/human-donors/IGVFDO9236YUAT/) has in progress subobject phenotypic feature [973e8365-f16f-4cd4-b8d8-3810cfb6de08](/phenotypic-features/973e8365-f16f-4cd4-b8d8-3810cfb6de08/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9236YUAT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9236YUAT](/human-donors/IGVFDO9236YUAT/) has in progress subobject phenotypic feature [633b00ad-b194-4a5e-996f-0e6e7d188a4b](/phenotypic-features/633b00ad-b194-4a5e-996f-0e6e7d188a4b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9236YUAT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9236YUAT](/human-donors/IGVFDO9236YUAT/) has in progress subobject phenotypic feature [c0ce9b04-e7ed-4b93-a2eb-beb1600b8a07](/phenotypic-features/c0ce9b04-e7ed-4b93-a2eb-beb1600b8a07/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9236YUAT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [4bba57b2-fe4e-46c7-ace5-64469134b74a](/phenotypic-features/4bba57b2-fe4e-46c7-ace5-64469134b74a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [0ba97096-19d9-4d59-873a-9ca2c42354f0](/phenotypic-features/0ba97096-19d9-4d59-873a-9ca2c42354f0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [d42b2763-dab2-4434-a2ff-90f908a90db1](/phenotypic-features/d42b2763-dab2-4434-a2ff-90f908a90db1/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [1e6fcee5-5039-4c6f-86fc-6271a4ccbc72](/phenotypic-features/1e6fcee5-5039-4c6f-86fc-6271a4ccbc72/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [4f2de9a0-55d4-4474-973d-63b58cb1b930](/phenotypic-features/4f2de9a0-55d4-4474-973d-63b58cb1b930/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [c2f14d65-c7f8-46d1-8093-818906473518](/phenotypic-features/c2f14d65-c7f8-46d1-8093-818906473518/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [2c783c74-fa89-4766-b218-3e0da350c6da](/phenotypic-features/2c783c74-fa89-4766-b218-3e0da350c6da/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [48e0e9c9-7759-4913-8219-2471979d793e](/phenotypic-features/48e0e9c9-7759-4913-8219-2471979d793e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a393f393-5482-4671-b57c-fe8bfe6e8927](/phenotypic-features/a393f393-5482-4671-b57c-fe8bfe6e8927/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a0a18d18-51af-4fbc-9a8c-baa6f6b720cd](/phenotypic-features/a0a18d18-51af-4fbc-9a8c-baa6f6b720cd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [5206796d-df44-42d5-a495-92cfc4ef55c6](/phenotypic-features/5206796d-df44-42d5-a495-92cfc4ef55c6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5214IKNF](/human-donors/IGVFDO5214IKNF/) has in progress subobject phenotypic feature [5c5d17b8-c589-44ff-8c25-ac4b8b32e0fc](/phenotypic-features/5c5d17b8-c589-44ff-8c25-ac4b8b32e0fc/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5214IKNF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5214IKNF](/human-donors/IGVFDO5214IKNF/) has in progress subobject phenotypic feature [27767bd2-d2f7-4c12-a080-0891f07591b7](/phenotypic-features/27767bd2-d2f7-4c12-a080-0891f07591b7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5214IKNF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5214IKNF](/human-donors/IGVFDO5214IKNF/) has in progress subobject phenotypic feature [b26dcc82-a5c2-42f3-a63e-a43fd9359ebf](/phenotypic-features/b26dcc82-a5c2-42f3-a63e-a43fd9359ebf/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5214IKNF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5214IKNF](/human-donors/IGVFDO5214IKNF/) has in progress subobject phenotypic feature [213d8bcb-11ce-4b7f-ae80-8a3e9b73ae83](/phenotypic-features/213d8bcb-11ce-4b7f-ae80-8a3e9b73ae83/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5214IKNF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6335EDSP](/human-donors/IGVFDO6335EDSP/) has in progress subobject phenotypic feature [95318355-70c3-4d1f-b769-23c8f6fcb818](/phenotypic-features/95318355-70c3-4d1f-b769-23c8f6fcb818/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6335EDSP/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6335EDSP](/human-donors/IGVFDO6335EDSP/) has in progress subobject phenotypic feature [b97cca29-dfd6-4e48-83dc-143032916f09](/phenotypic-features/b97cca29-dfd6-4e48-83dc-143032916f09/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6335EDSP/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6335EDSP](/human-donors/IGVFDO6335EDSP/) has in progress subobject phenotypic feature [626d75db-88c2-45dc-b60e-0ba3d743554a](/phenotypic-features/626d75db-88c2-45dc-b60e-0ba3d743554a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6335EDSP/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6335EDSP](/human-donors/IGVFDO6335EDSP/) has in progress subobject phenotypic feature [934388ae-cdc7-44f0-8047-e19d5c9bc009](/phenotypic-features/934388ae-cdc7-44f0-8047-e19d5c9bc009/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6335EDSP/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6335EDSP](/human-donors/IGVFDO6335EDSP/) has in progress subobject phenotypic feature [7215e4eb-09b8-45c2-9152-ab968f0bea53](/phenotypic-features/7215e4eb-09b8-45c2-9152-ab968f0bea53/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6335EDSP/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6335EDSP](/human-donors/IGVFDO6335EDSP/) has in progress subobject phenotypic feature [1356878d-9f70-4902-a5b3-1606e717cd56](/phenotypic-features/1356878d-9f70-4902-a5b3-1606e717cd56/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6335EDSP/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7051PRHR](/human-donors/IGVFDO7051PRHR/) has in progress subobject phenotypic feature [e8ffe241-f099-4ec4-90fe-c8e355fd2ae5](/phenotypic-features/e8ffe241-f099-4ec4-90fe-c8e355fd2ae5/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7051PRHR/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7051PRHR](/human-donors/IGVFDO7051PRHR/) has in progress subobject phenotypic feature [d6465499-8253-4073-8c50-1cf8deb110dc](/phenotypic-features/d6465499-8253-4073-8c50-1cf8deb110dc/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7051PRHR/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7051PRHR](/human-donors/IGVFDO7051PRHR/) has in progress subobject phenotypic feature [9e1ef8ad-9ca2-471a-b9f8-861c43a2d643](/phenotypic-features/9e1ef8ad-9ca2-471a-b9f8-861c43a2d643/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7051PRHR/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7051PRHR](/human-donors/IGVFDO7051PRHR/) has in progress subobject phenotypic feature [7d5fed93-7936-473e-8fa3-16d013205c27](/phenotypic-features/7d5fed93-7936-473e-8fa3-16d013205c27/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7051PRHR/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7051PRHR](/human-donors/IGVFDO7051PRHR/) has in progress subobject phenotypic feature [076a6fa7-1eec-479d-baae-93da0b5812c4](/phenotypic-features/076a6fa7-1eec-479d-baae-93da0b5812c4/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7051PRHR/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7051PRHR](/human-donors/IGVFDO7051PRHR/) has in progress subobject phenotypic feature [9687710e-1657-496d-a39a-02a10f0c7fcb](/phenotypic-features/9687710e-1657-496d-a39a-02a10f0c7fcb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7051PRHR/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3511LRHY](/measurement-sets/IGVFDS3511LRHY/) has sequence file(s): [IGVFFI4937BBFB](/sequence-files/IGVFFI4937BBFB/), [IGVFFI5969CWGM](/sequence-files/IGVFFI5969CWGM/), [IGVFFI9765JPAX](/sequence-files/IGVFFI9765JPAX/), [IGVFFI8372UBWF](/sequence-files/IGVFFI8372UBWF/), [IGVFFI7555OJQP](/sequence-files/IGVFFI7555OJQP/), [IGVFFI5050YYSZ](/sequence-files/IGVFFI5050YYSZ/), [IGVFFI7050UIOP](/sequence-files/IGVFFI7050UIOP/), [IGVFFI0561PDKK](/sequence-files/IGVFFI0561PDKK/), [IGVFFI9895PKLD](/sequence-files/IGVFFI9895PKLD/), [IGVFFI6270JLCF](/sequence-files/IGVFFI6270JLCF/), [IGVFFI3546ISYB](/sequence-files/IGVFFI3546ISYB/), [IGVFFI4431NGGV](/sequence-files/IGVFFI4431NGGV/), [IGVFFI7481RTTJ](/sequence-files/IGVFFI7481RTTJ/), [IGVFFI6846EYPT](/sequence-files/IGVFFI6846EYPT/), [IGVFFI6339PLUH](/sequence-files/IGVFFI6339PLUH/), [IGVFFI2981PPJF](/sequence-files/IGVFFI2981PPJF/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3511LRHY/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS3511LRHY](/measurement-sets/IGVFDS3511LRHY/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS3511LRHY/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS3511LRHY](/measurement-sets/IGVFDS3511LRHY/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS3511LRHY/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": false,
"creation_timestamp": "2025-03-19T19:58:08.275460+00:00",
"data_use_limitation_summaries": [
"No limitations"
],
"donors": [
{
"@id": "/human-donors/IGVFDO7754VJKM/",
"accession": "IGVFDO7754VJKM",
"aliases": [
"igvf:corces_donor_BANN0341"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6335EDSP/",
"accession": "IGVFDO6335EDSP",
"aliases": [
"igvf:corces_donor_BANN1329"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6380POHE/",
"accession": "IGVFDO6380POHE",
"aliases": [
"igvf:corces_donor_BANN0124"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8800RKVB/",
"accession": "IGVFDO8800RKVB",
"aliases": [
"igvf:corces_donor_BANN1872"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9236YUAT/",
"accession": "IGVFDO9236YUAT",
"aliases": [
"igvf:corces_donor_BANN0227"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9211DWXZ/",
"accession": "IGVFDO9211DWXZ",
"aliases": [
"igvf:corces_donor_BANN1352"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7051PRHR/",
"accession": "IGVFDO7051PRHR",
"aliases": [
"igvf:corces_donor_BANN1234"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5214IKNF/",
"accession": "IGVFDO5214IKNF",
"aliases": [
"igvf:corces_donor_BANN1070"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI4937BBFB/",
"accession": "IGVFFI4937BBFB",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L003_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:27.955629+00:00",
"file_format": "fastq",
"file_size": 590133647,
"href": "/sequence-files/IGVFFI4937BBFB/@@download/IGVFFI4937BBFB.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/53df7a7c-ad95-4660-a005-70c7fd6a27a8/IGVFFI4937BBFB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L003_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5969CWGM/",
"accession": "IGVFFI5969CWGM",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L003_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:35.045287+00:00",
"file_format": "fastq",
"file_size": 1387042395,
"href": "/sequence-files/IGVFFI5969CWGM/@@download/IGVFFI5969CWGM.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/25c5ef3e-f3ef-4bc5-b7b1-713252ad3bfd/IGVFFI5969CWGM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L003_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9765JPAX/",
"accession": "IGVFFI9765JPAX",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L004_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:47.714749+00:00",
"file_format": "fastq",
"file_size": 1368545740,
"href": "/sequence-files/IGVFFI9765JPAX/@@download/IGVFFI9765JPAX.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/c103a497-1908-4d9b-9969-9901d5eb7e0e/IGVFFI9765JPAX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L004_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8372UBWF/",
"accession": "IGVFFI8372UBWF",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L004_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:50.764391+00:00",
"file_format": "fastq",
"file_size": 2350488346,
"href": "/sequence-files/IGVFFI8372UBWF/@@download/IGVFFI8372UBWF.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/6c68ceec-a09b-4a2b-8d63-0c1cf677b881/IGVFFI8372UBWF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L004_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7555OJQP/",
"accession": "IGVFFI7555OJQP",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L005_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:56.340578+00:00",
"file_format": "fastq",
"file_size": 2434661205,
"href": "/sequence-files/IGVFFI7555OJQP/@@download/IGVFFI7555OJQP.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/afe390db-2a4a-450f-9217-1e837d79cfff/IGVFFI7555OJQP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L005_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5050YYSZ/",
"accession": "IGVFFI5050YYSZ",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L006_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:06:11.400102+00:00",
"file_format": "fastq",
"file_size": 2438578413,
"href": "/sequence-files/IGVFFI5050YYSZ/@@download/IGVFFI5050YYSZ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/002ffad0-f8e1-4f05-aeeb-615775b89629/IGVFFI5050YYSZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L006_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7050UIOP/",
"accession": "IGVFFI7050UIOP",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L006_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:06:17.722185+00:00",
"file_format": "fastq",
"file_size": 2401012139,
"href": "/sequence-files/IGVFFI7050UIOP/@@download/IGVFFI7050UIOP.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/770df293-4ae6-4745-b092-a921eadf53fc/IGVFFI7050UIOP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L006_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0561PDKK/",
"accession": "IGVFFI0561PDKK",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L003_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:38.272034+00:00",
"file_format": "fastq",
"file_size": 2381570848,
"href": "/sequence-files/IGVFFI0561PDKK/@@download/IGVFFI0561PDKK.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/e20526ef-63db-4340-b7e8-bd6184c09a48/IGVFFI0561PDKK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L003_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9895PKLD/",
"accession": "IGVFFI9895PKLD",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L004_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:44.449809+00:00",
"file_format": "fastq",
"file_size": 2394960115,
"href": "/sequence-files/IGVFFI9895PKLD/@@download/IGVFFI9895PKLD.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/569b6420-ee21-4b8c-a81e-522c1fa69b39/IGVFFI9895PKLD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L004_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6270JLCF/",
"accession": "IGVFFI6270JLCF",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L003_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:31.765780+00:00",
"file_format": "fastq",
"file_size": 2423125380,
"href": "/sequence-files/IGVFFI6270JLCF/@@download/IGVFFI6270JLCF.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/07f1f1fa-1646-4ee6-9739-1e6e50e6bf73/IGVFFI6270JLCF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L003_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3546ISYB/",
"accession": "IGVFFI3546ISYB",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L005_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:06:00.200619+00:00",
"file_format": "fastq",
"file_size": 1399389865,
"href": "/sequence-files/IGVFFI3546ISYB/@@download/IGVFFI3546ISYB.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/9aa30e20-c957-468c-8371-3d6f736cbd0a/IGVFFI3546ISYB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L005_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4431NGGV/",
"accession": "IGVFFI4431NGGV",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L005_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:06:05.014101+00:00",
"file_format": "fastq",
"file_size": 2399510357,
"href": "/sequence-files/IGVFFI4431NGGV/@@download/IGVFFI4431NGGV.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/ca9ed42d-d280-4418-a3b6-501c64f38c72/IGVFFI4431NGGV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L005_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7481RTTJ/",
"accession": "IGVFFI7481RTTJ",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L006_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:06:14.637478+00:00",
"file_format": "fastq",
"file_size": 1397901985,
"href": "/sequence-files/IGVFFI7481RTTJ/@@download/IGVFFI7481RTTJ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/5657705e-1267-4481-b717-6f391de8be10/IGVFFI7481RTTJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L006_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6846EYPT/",
"accession": "IGVFFI6846EYPT",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L005_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:53.603158+00:00",
"file_format": "fastq",
"file_size": 592646345,
"href": "/sequence-files/IGVFFI6846EYPT/@@download/IGVFFI6846EYPT.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/0a1b8e62-f53d-4485-825a-e58c4826c844/IGVFFI6846EYPT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L005_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6339PLUH/",
"accession": "IGVFFI6339PLUH",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L004_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:05:41.272676+00:00",
"file_format": "fastq",
"file_size": 584622326,
"href": "/sequence-files/IGVFFI6339PLUH/@@download/IGVFFI6339PLUH.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/2892d7fc-cd4e-42f3-b8d1-9ee4356a272b/IGVFFI6339PLUH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L004_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2981PPJF/",
"accession": "IGVFFI2981PPJF",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP029_G4_P077_L006_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:06:08.264514+00:00",
"file_format": "fastq",
"file_size": 591856047,
"href": "/sequence-files/IGVFFI2981PPJF/@@download/IGVFFI2981PPJF.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/9489e28b-749d-45e1-99ce-69b956d47b5e/IGVFFI2981PPJF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP029_G4_L004_P077_S30_L006_I1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI7587TJLC/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS2331GZHK/",
"accession": "IGVFDS2331GZHK",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM9093UXXC/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9093UXXC",
"aliases": [
"igvf:corces_multiplexedSample_RP029_G4"
],
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "putamen",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "substantia nigra",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"submitted_files_timestamp": "2025-03-21T03:05:27.955629+00:00",
"summary": "single-nucleus ATAC-seq (10x multiome)",
"uuid": "ed2a9243-9b37-45a8-b17d-dc9185bbe507"
}