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IGVFDS3499EXHQ

released
File Set Type
experimental data
Summary
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18505, NA18909, NA18916, NA18923, NA19175
Assay Term
self-transcribing active regulatory region sequencing assay
Sample Summaries
  • Homo sapiens (female) K562 cell line transfected with a reporter library
Protocols
Aliases
tim-reddy:starr-seq-measurement-set-k562-P009
Attribution
Tim Reddy, Duke

Sequencing Results (Illumina)

2 items
Read Names
fastq
reads
R1
1
Read 1
AAFHYKJM5
1
6.0 GB
Tim Reddy, Duke
validated
fastq
reads
R2
1
Read 2
AAFHYKJM5
1
7.2 GB
Tim Reddy, Duke
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_K562
female
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18505, NA18909, NA18916, NA18923, NA19175

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18505, NA18909, NA18916, NA18923, NA19175
  • tim-reddy:starr-seq-principal-analysis-set-k562-P009
Tim Reddy, Duke