{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3485SAPD/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3485SAPD",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM1740AUMH](/in-vitro-systems/IGVFSM1740AUMH/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1740AUMH/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS3485SAPD](/measurement-sets/IGVFDS3485SAPD/) has sequence file(s) [IGVFFI2310WNUI](/sequence-files/IGVFFI2310WNUI/), [IGVFFI6868ZIZU](/sequence-files/IGVFFI6868ZIZU/), [IGVFFI2228PRWC](/sequence-files/IGVFFI2228PRWC/), [IGVFFI6599FITT](/sequence-files/IGVFFI6599FITT/), [IGVFFI3784NNIW](/sequence-files/IGVFFI3784NNIW/), [IGVFFI4966HGLS](/sequence-files/IGVFFI4966HGLS/), [IGVFFI4457HWQJ](/sequence-files/IGVFFI4457HWQJ/), [IGVFFI3737WHNM](/sequence-files/IGVFFI3737WHNM/), [IGVFFI7798HOHF](/sequence-files/IGVFFI7798HOHF/), [IGVFFI3553ISDU](/sequence-files/IGVFFI3553ISDU/), [IGVFFI2215YSMB](/sequence-files/IGVFFI2215YSMB/), [IGVFFI6588MUBD](/sequence-files/IGVFFI6588MUBD/), [IGVFFI6265AVEW](/sequence-files/IGVFFI6265AVEW/), [IGVFFI0953CGQB](/sequence-files/IGVFFI0953CGQB/), [IGVFFI5954LMRM](/sequence-files/IGVFFI5954LMRM/), [IGVFFI7509ZCDU](/sequence-files/IGVFFI7509ZCDU/), [IGVFFI1951QZWI](/sequence-files/IGVFFI1951QZWI/), [IGVFFI3834OCIC](/sequence-files/IGVFFI3834OCIC/), [IGVFFI8885BTAU](/sequence-files/IGVFFI8885BTAU/), [IGVFFI7342HLPV](/sequence-files/IGVFFI7342HLPV/), [IGVFFI1637MJBF](/sequence-files/IGVFFI1637MJBF/), [IGVFFI5094WSNI](/sequence-files/IGVFFI5094WSNI/), [IGVFFI5351WNRF](/sequence-files/IGVFFI5351WNRF/), [IGVFFI1721AWTM](/sequence-files/IGVFFI1721AWTM/), [IGVFFI8711JENQ](/sequence-files/IGVFFI8711JENQ/), [IGVFFI3402XYGE](/sequence-files/IGVFFI3402XYGE/), [IGVFFI9942BLFG](/sequence-files/IGVFFI9942BLFG/), [IGVFFI9553ZPOP](/sequence-files/IGVFFI9553ZPOP/), [IGVFFI9216PYYG](/sequence-files/IGVFFI9216PYYG/), [IGVFFI5267FJRZ](/sequence-files/IGVFFI5267FJRZ/), [IGVFFI2221GABI](/sequence-files/IGVFFI2221GABI/), [IGVFFI9635NZHA](/sequence-files/IGVFFI9635NZHA/), [IGVFFI4480TAYK](/sequence-files/IGVFFI4480TAYK/), [IGVFFI7332SJZD](/sequence-files/IGVFFI7332SJZD/), [IGVFFI3031LCGO](/sequence-files/IGVFFI3031LCGO/), [IGVFFI9743LUOW](/sequence-files/IGVFFI9743LUOW/), [IGVFFI4319GMWE](/sequence-files/IGVFFI4319GMWE/), [IGVFFI4811XJFY](/sequence-files/IGVFFI4811XJFY/), [IGVFFI6487WVVT](/sequence-files/IGVFFI6487WVVT/), [IGVFFI7133FKPH](/sequence-files/IGVFFI7133FKPH/), [IGVFFI6598PFOW](/sequence-files/IGVFFI6598PFOW/), [IGVFFI0369XBXG](/sequence-files/IGVFFI0369XBXG/), [IGVFFI0886PBVO](/sequence-files/IGVFFI0886PBVO/), [IGVFFI1105ARQQ](/sequence-files/IGVFFI1105ARQQ/), [IGVFFI3957ZXFV](/sequence-files/IGVFFI3957ZXFV/), [IGVFFI3129KVKC](/sequence-files/IGVFFI3129KVKC/), [IGVFFI4183BLYM](/sequence-files/IGVFFI4183BLYM/), [IGVFFI0905GRJE](/sequence-files/IGVFFI0905GRJE/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS3485SAPD/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3485SAPD](/measurement-sets/IGVFDS3485SAPD/) has sequence file(s): [IGVFFI2310WNUI](/sequence-files/IGVFFI2310WNUI/), [IGVFFI6868ZIZU](/sequence-files/IGVFFI6868ZIZU/), [IGVFFI2228PRWC](/sequence-files/IGVFFI2228PRWC/), [IGVFFI6599FITT](/sequence-files/IGVFFI6599FITT/), [IGVFFI3784NNIW](/sequence-files/IGVFFI3784NNIW/), [IGVFFI4966HGLS](/sequence-files/IGVFFI4966HGLS/), [IGVFFI4457HWQJ](/sequence-files/IGVFFI4457HWQJ/), [IGVFFI3737WHNM](/sequence-files/IGVFFI3737WHNM/), [IGVFFI7798HOHF](/sequence-files/IGVFFI7798HOHF/), [IGVFFI3553ISDU](/sequence-files/IGVFFI3553ISDU/), [IGVFFI2215YSMB](/sequence-files/IGVFFI2215YSMB/), [IGVFFI6588MUBD](/sequence-files/IGVFFI6588MUBD/), [IGVFFI6265AVEW](/sequence-files/IGVFFI6265AVEW/), [IGVFFI0953CGQB](/sequence-files/IGVFFI0953CGQB/), [IGVFFI5954LMRM](/sequence-files/IGVFFI5954LMRM/), [IGVFFI7509ZCDU](/sequence-files/IGVFFI7509ZCDU/), [IGVFFI1951QZWI](/sequence-files/IGVFFI1951QZWI/), [IGVFFI3834OCIC](/sequence-files/IGVFFI3834OCIC/), [IGVFFI8885BTAU](/sequence-files/IGVFFI8885BTAU/), [IGVFFI7342HLPV](/sequence-files/IGVFFI7342HLPV/), [IGVFFI1637MJBF](/sequence-files/IGVFFI1637MJBF/), [IGVFFI5094WSNI](/sequence-files/IGVFFI5094WSNI/), [IGVFFI5351WNRF](/sequence-files/IGVFFI5351WNRF/), [IGVFFI1721AWTM](/sequence-files/IGVFFI1721AWTM/), [IGVFFI8711JENQ](/sequence-files/IGVFFI8711JENQ/), [IGVFFI3402XYGE](/sequence-files/IGVFFI3402XYGE/), [IGVFFI9942BLFG](/sequence-files/IGVFFI9942BLFG/), [IGVFFI9553ZPOP](/sequence-files/IGVFFI9553ZPOP/), [IGVFFI9216PYYG](/sequence-files/IGVFFI9216PYYG/), [IGVFFI5267FJRZ](/sequence-files/IGVFFI5267FJRZ/), [IGVFFI2221GABI](/sequence-files/IGVFFI2221GABI/), [IGVFFI9635NZHA](/sequence-files/IGVFFI9635NZHA/), [IGVFFI4480TAYK](/sequence-files/IGVFFI4480TAYK/), [IGVFFI7332SJZD](/sequence-files/IGVFFI7332SJZD/), [IGVFFI3031LCGO](/sequence-files/IGVFFI3031LCGO/), [IGVFFI9743LUOW](/sequence-files/IGVFFI9743LUOW/), [IGVFFI4319GMWE](/sequence-files/IGVFFI4319GMWE/), [IGVFFI4811XJFY](/sequence-files/IGVFFI4811XJFY/), [IGVFFI6487WVVT](/sequence-files/IGVFFI6487WVVT/), [IGVFFI7133FKPH](/sequence-files/IGVFFI7133FKPH/), [IGVFFI6598PFOW](/sequence-files/IGVFFI6598PFOW/), [IGVFFI0369XBXG](/sequence-files/IGVFFI0369XBXG/), [IGVFFI0886PBVO](/sequence-files/IGVFFI0886PBVO/), [IGVFFI1105ARQQ](/sequence-files/IGVFFI1105ARQQ/), [IGVFFI3957ZXFV](/sequence-files/IGVFFI3957ZXFV/), [IGVFFI3129KVKC](/sequence-files/IGVFFI3129KVKC/), [IGVFFI4183BLYM](/sequence-files/IGVFFI4183BLYM/), [IGVFFI0905GRJE](/sequence-files/IGVFFI0905GRJE/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3485SAPD/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS3485SAPD](/measurement-sets/IGVFDS3485SAPD/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS3485SAPD/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4869FXYY/",
"accession": "IGVFDS4869FXYY",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-Jurkat-PE2_Exp2_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-12-13T08:48:09.216948+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1080XFGV/",
"accession": "IGVFDO1080XFGV",
"aliases": [
"igvf:donor_of_Jurkat"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI2310WNUI/",
"accession": "IGVFFI2310WNUI",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:30:56.209283+00:00",
"file_format": "fastq",
"file_size": 2391948,
"href": "/sequence-files/IGVFFI2310WNUI/@@download/IGVFFI2310WNUI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/b8812383-1f54-45bc-9fd2-b4164c89eeb4/IGVFFI2310WNUI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep3_S183_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6868ZIZU/",
"accession": "IGVFFI6868ZIZU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:57:06.327297+00:00",
"file_format": "fastq",
"file_size": 8297006,
"href": "/sequence-files/IGVFFI6868ZIZU/@@download/IGVFFI6868ZIZU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c87ba756-2b10-4737-8da0-cb5aa977db18/IGVFFI6868ZIZU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep7_S187_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2228PRWC/",
"accession": "IGVFFI2228PRWC",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:29:23.903380+00:00",
"file_format": "fastq",
"file_size": 2145431,
"href": "/sequence-files/IGVFFI2228PRWC/@@download/IGVFFI2228PRWC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d3e13f61-224d-4378-bec0-145fc82c3bd6/IGVFFI2228PRWC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep1_S181_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6599FITT/",
"accession": "IGVFFI6599FITT",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:56:26.825281+00:00",
"file_format": "fastq",
"file_size": 8565734,
"href": "/sequence-files/IGVFFI6599FITT/@@download/IGVFFI6599FITT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/987db8c8-d95b-4a66-bc2f-8d09b66ab15b/IGVFFI6599FITT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep6_S186_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3784NNIW/",
"accession": "IGVFFI3784NNIW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:53:44.963374+00:00",
"file_format": "fastq",
"file_size": 8411891,
"href": "/sequence-files/IGVFFI3784NNIW/@@download/IGVFFI3784NNIW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ce3c7ae4-0002-4c61-9b1d-b2e24f5ed5a1/IGVFFI3784NNIW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep2_S182_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4966HGLS/",
"accession": "IGVFFI4966HGLS",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:03:21.955323+00:00",
"file_format": "fastq",
"file_size": 12610626,
"href": "/sequence-files/IGVFFI4966HGLS/@@download/IGVFFI4966HGLS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d86e1be1-6de5-4096-a31e-2f5d0d48995c/IGVFFI4966HGLS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep8_S188_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4457HWQJ/",
"accession": "IGVFFI4457HWQJ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:27:20.930236+00:00",
"file_format": "fastq",
"file_size": 2610753,
"href": "/sequence-files/IGVFFI4457HWQJ/@@download/IGVFFI4457HWQJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f36276f5-ba59-410d-bdf3-5077a4f10385/IGVFFI4457HWQJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep2_S182_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3737WHNM/",
"accession": "IGVFFI3737WHNM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:04:42.158085+00:00",
"file_format": "fastq",
"file_size": 12146875,
"href": "/sequence-files/IGVFFI3737WHNM/@@download/IGVFFI3737WHNM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8c2819ab-f6d5-4846-b61c-4a6d7a554c70/IGVFFI3737WHNM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep10_S190_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7798HOHF/",
"accession": "IGVFFI7798HOHF",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:00:43.345734+00:00",
"file_format": "fastq",
"file_size": 12614629,
"href": "/sequence-files/IGVFFI7798HOHF/@@download/IGVFFI7798HOHF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/6a8c67e9-e2ee-45e7-971a-c42f0f55da82/IGVFFI7798HOHF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep4_S184_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3553ISDU/",
"accession": "IGVFFI3553ISDU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:06:01.065442+00:00",
"file_format": "fastq",
"file_size": 12009478,
"href": "/sequence-files/IGVFFI3553ISDU/@@download/IGVFFI3553ISDU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/017617eb-14b1-4bfa-a226-c355ad95cb20/IGVFFI3553ISDU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep12_S192_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2215YSMB/",
"accession": "IGVFFI2215YSMB",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:34:38.771910+00:00",
"file_format": "fastq",
"file_size": 2258077,
"href": "/sequence-files/IGVFFI2215YSMB/@@download/IGVFFI2215YSMB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/7a1969bb-6c0b-4b9c-834c-68e6c74ad40e/IGVFFI2215YSMB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep9_S189_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6588MUBD/",
"accession": "IGVFFI6588MUBD",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:52:57.879066+00:00",
"file_format": "fastq",
"file_size": 7592583,
"href": "/sequence-files/IGVFFI6588MUBD/@@download/IGVFFI6588MUBD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/aa5a10d9-a762-434a-aa6a-ec1cdb310328/IGVFFI6588MUBD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep1_S181_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6265AVEW/",
"accession": "IGVFFI6265AVEW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:30:10.127096+00:00",
"file_format": "fastq",
"file_size": 2357075,
"href": "/sequence-files/IGVFFI6265AVEW/@@download/IGVFFI6265AVEW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/460dbae8-411f-4db4-8e1c-47ee39c52cfd/IGVFFI6265AVEW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep2_S182_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0953CGQB/",
"accession": "IGVFFI0953CGQB",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:30:36.707647+00:00",
"file_format": "fastq",
"file_size": 2533188,
"href": "/sequence-files/IGVFFI0953CGQB/@@download/IGVFFI0953CGQB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ed475251-b0bd-4814-a2bb-c5b18615739b/IGVFFI0953CGQB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep7_S187_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5954LMRM/",
"accession": "IGVFFI5954LMRM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:32:47.589183+00:00",
"file_format": "fastq",
"file_size": 2406253,
"href": "/sequence-files/IGVFFI5954LMRM/@@download/IGVFFI5954LMRM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/a70bddc5-8cf4-473a-9230-55d949876044/IGVFFI5954LMRM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep6_S186_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7509ZCDU/",
"accession": "IGVFFI7509ZCDU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:29:59.412374+00:00",
"file_format": "fastq",
"file_size": 2780556,
"href": "/sequence-files/IGVFFI7509ZCDU/@@download/IGVFFI7509ZCDU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/24b59e86-d387-4d64-916e-9f79a057b150/IGVFFI7509ZCDU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep6_S186_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1951QZWI/",
"accession": "IGVFFI1951QZWI",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:02:42.527539+00:00",
"file_format": "fastq",
"file_size": 12577936,
"href": "/sequence-files/IGVFFI1951QZWI/@@download/IGVFFI1951QZWI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f8379c0c-1bbf-442f-9000-499fe88ac7a7/IGVFFI1951QZWI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep7_S187_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3834OCIC/",
"accession": "IGVFFI3834OCIC",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:58:59.894146+00:00",
"file_format": "fastq",
"file_size": 8049534,
"href": "/sequence-files/IGVFFI3834OCIC/@@download/IGVFFI3834OCIC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/47683d8a-20ac-431b-a5e2-3e5dcd1b1fcf/IGVFFI3834OCIC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep10_S190_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8885BTAU/",
"accession": "IGVFFI8885BTAU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:35:15.740927+00:00",
"file_format": "fastq",
"file_size": 2248412,
"href": "/sequence-files/IGVFFI8885BTAU/@@download/IGVFFI8885BTAU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/2283e8ba-6d9c-48d5-9366-85bfb77912e5/IGVFFI8885BTAU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep10_S190_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7342HLPV/",
"accession": "IGVFFI7342HLPV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:35:52.967465+00:00",
"file_format": "fastq",
"file_size": 2212963,
"href": "/sequence-files/IGVFFI7342HLPV/@@download/IGVFFI7342HLPV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/fdc9380b-ba4e-42b4-987e-785a63487838/IGVFFI7342HLPV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep11_S191_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1637MJBF/",
"accession": "IGVFFI1637MJBF",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:28:07.543607+00:00",
"file_format": "fastq",
"file_size": 2607588,
"href": "/sequence-files/IGVFFI1637MJBF/@@download/IGVFFI1637MJBF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f6240156-6432-44e4-931a-959efb80f8e8/IGVFFI1637MJBF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep3_S183_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5094WSNI/",
"accession": "IGVFFI5094WSNI",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:04:01.503515+00:00",
"file_format": "fastq",
"file_size": 12233963,
"href": "/sequence-files/IGVFFI5094WSNI/@@download/IGVFFI5094WSNI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/e1436280-a4dc-42fe-9cf0-48ecc9be1c2c/IGVFFI5094WSNI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep9_S189_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5351WNRF/",
"accession": "IGVFFI5351WNRF",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:00:15.847501+00:00",
"file_format": "fastq",
"file_size": 7864571,
"href": "/sequence-files/IGVFFI5351WNRF/@@download/IGVFFI5351WNRF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/7706af95-73b6-47d9-bd67-e88b784bc75b/IGVFFI5351WNRF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep12_S192_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1721AWTM/",
"accession": "IGVFFI1721AWTM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:32:10.719109+00:00",
"file_format": "fastq",
"file_size": 2284583,
"href": "/sequence-files/IGVFFI1721AWTM/@@download/IGVFFI1721AWTM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ed2758af-d0cf-4871-9c66-2ac1400c3317/IGVFFI1721AWTM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep5_S185_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8711JENQ/",
"accession": "IGVFFI8711JENQ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:05:21.496792+00:00",
"file_format": "fastq",
"file_size": 11997869,
"href": "/sequence-files/IGVFFI8711JENQ/@@download/IGVFFI8711JENQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/a67e66d5-abfa-42aa-ab58-33c838bca49a/IGVFFI8711JENQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep11_S191_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3402XYGE/",
"accession": "IGVFFI3402XYGE",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:34:01.626976+00:00",
"file_format": "fastq",
"file_size": 2318961,
"href": "/sequence-files/IGVFFI3402XYGE/@@download/IGVFFI3402XYGE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0553c694-58cc-4fcc-8325-ca4e3f33a045/IGVFFI3402XYGE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep8_S188_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9942BLFG/",
"accession": "IGVFFI9942BLFG",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:36:30.214525+00:00",
"file_format": "fastq",
"file_size": 2206106,
"href": "/sequence-files/IGVFFI9942BLFG/@@download/IGVFFI9942BLFG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/a91472ac-65c1-42c3-bae6-5accea7c959c/IGVFFI9942BLFG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep12_S192_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9553ZPOP/",
"accession": "IGVFFI9553ZPOP",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:55:48.561739+00:00",
"file_format": "fastq",
"file_size": 8132010,
"href": "/sequence-files/IGVFFI9553ZPOP/@@download/IGVFFI9553ZPOP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/1c1b572a-1909-4ff1-9812-6218072cd0ba/IGVFFI9553ZPOP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep5_S185_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9216PYYG/",
"accession": "IGVFFI9216PYYG",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:33:24.810650+00:00",
"file_format": "fastq",
"file_size": 2321201,
"href": "/sequence-files/IGVFFI9216PYYG/@@download/IGVFFI9216PYYG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/572cb152-482f-42a3-a237-d9615f3a4a5e/IGVFFI9216PYYG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep7_S187_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5267FJRZ/",
"accession": "IGVFFI5267FJRZ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:31:51.150614+00:00",
"file_format": "fastq",
"file_size": 2527716,
"href": "/sequence-files/IGVFFI5267FJRZ/@@download/IGVFFI5267FJRZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ec3bda61-50d2-4cee-89c8-5fe2ec692bf1/IGVFFI5267FJRZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep9_S189_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2221GABI/",
"accession": "IGVFFI2221GABI",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:02:02.603124+00:00",
"file_format": "fastq",
"file_size": 13031890,
"href": "/sequence-files/IGVFFI2221GABI/@@download/IGVFFI2221GABI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/54d9e68b-cf9b-4a7a-8423-47304be9a2d1/IGVFFI2221GABI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep6_S186_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9635NZHA/",
"accession": "IGVFFI9635NZHA",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:32:28.446780+00:00",
"file_format": "fastq",
"file_size": 2465203,
"href": "/sequence-files/IGVFFI9635NZHA/@@download/IGVFFI9635NZHA.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/cae495ec-2928-4c7b-b86e-38dc8afc5141/IGVFFI9635NZHA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep10_S190_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4480TAYK/",
"accession": "IGVFFI4480TAYK",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:26:32.631112+00:00",
"file_format": "fastq",
"file_size": 2405190,
"href": "/sequence-files/IGVFFI4480TAYK/@@download/IGVFFI4480TAYK.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/2e9bb613-6ed0-461b-9467-9c8d3a1cddc5/IGVFFI4480TAYK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep1_S181_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7332SJZD/",
"accession": "IGVFFI7332SJZD",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:01:23.211771+00:00",
"file_format": "fastq",
"file_size": 12372240,
"href": "/sequence-files/IGVFFI7332SJZD/@@download/IGVFFI7332SJZD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/75d32c67-4153-4362-ba3f-70c8ddb7cc4f/IGVFFI7332SJZD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep5_S185_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3031LCGO/",
"accession": "IGVFFI3031LCGO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:58:22.324704+00:00",
"file_format": "fastq",
"file_size": 8033890,
"href": "/sequence-files/IGVFFI3031LCGO/@@download/IGVFFI3031LCGO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/e3a443e7-fef8-447b-9eed-d3fcb79ca614/IGVFFI3031LCGO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep9_S189_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9743LUOW/",
"accession": "IGVFFI9743LUOW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:55:10.889414+00:00",
"file_format": "fastq",
"file_size": 8342210,
"href": "/sequence-files/IGVFFI9743LUOW/@@download/IGVFFI9743LUOW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/e2123abc-54bb-4742-9b62-0056aad85515/IGVFFI9743LUOW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep4_S184_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4319GMWE/",
"accession": "IGVFFI4319GMWE",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:59:37.738791+00:00",
"file_format": "fastq",
"file_size": 7859167,
"href": "/sequence-files/IGVFFI4319GMWE/@@download/IGVFFI4319GMWE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/17e73ba4-d242-44e8-a437-f43b766b10c0/IGVFFI4319GMWE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep11_S191_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4811XJFY/",
"accession": "IGVFFI4811XJFY",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T11:00:03.940189+00:00",
"file_format": "fastq",
"file_size": 13026741,
"href": "/sequence-files/IGVFFI4811XJFY/@@download/IGVFFI4811XJFY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/611e2e16-8b6f-43e4-8112-68a81466b648/IGVFFI4811XJFY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep3_S183_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6487WVVT/",
"accession": "IGVFFI6487WVVT",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:57:44.253744+00:00",
"file_format": "fastq",
"file_size": 8277850,
"href": "/sequence-files/IGVFFI6487WVVT/@@download/IGVFFI6487WVVT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f19b6a7f-f565-4179-8d56-16fa404ebea2/IGVFFI6487WVVT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep8_S188_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7133FKPH/",
"accession": "IGVFFI7133FKPH",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:33:05.840967+00:00",
"file_format": "fastq",
"file_size": 2490135,
"href": "/sequence-files/IGVFFI7133FKPH/@@download/IGVFFI7133FKPH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/15c2b746-5478-42c2-9996-7e5d05b409c7/IGVFFI7133FKPH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep11_S191_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6598PFOW/",
"accession": "IGVFFI6598PFOW",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:54:32.394678+00:00",
"file_format": "fastq",
"file_size": 8572839,
"href": "/sequence-files/IGVFFI6598PFOW/@@download/IGVFFI6598PFOW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/921be76f-dbc2-46b3-a151-b22b385ae702/IGVFFI6598PFOW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep3_S183_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0369XBXG/",
"accession": "IGVFFI0369XBXG",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:33:43.470082+00:00",
"file_format": "fastq",
"file_size": 2448000,
"href": "/sequence-files/IGVFFI0369XBXG/@@download/IGVFFI0369XBXG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8281dcb7-4662-45b6-b296-9e05702879ac/IGVFFI0369XBXG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep12_S192_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0886PBVO/",
"accession": "IGVFFI0886PBVO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:59:14.182739+00:00",
"file_format": "fastq",
"file_size": 12833138,
"href": "/sequence-files/IGVFFI0886PBVO/@@download/IGVFFI0886PBVO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/85adb741-111c-46d9-90d8-3c9384e0cc53/IGVFFI0886PBVO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep2_S182_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1105ARQQ/",
"accession": "IGVFFI1105ARQQ",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:29:22.234546+00:00",
"file_format": "fastq",
"file_size": 2559715,
"href": "/sequence-files/IGVFFI1105ARQQ/@@download/IGVFFI1105ARQQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/5a6e96e3-b529-44f2-97e4-6c2c6f3a020e/IGVFFI1105ARQQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep5_S185_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3957ZXFV/",
"accession": "IGVFFI3957ZXFV",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:31:13.714809+00:00",
"file_format": "fastq",
"file_size": 2520594,
"href": "/sequence-files/IGVFFI3957ZXFV/@@download/IGVFFI3957ZXFV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f8746e5b-f484-48e3-beac-cda2b4da214a/IGVFFI3957ZXFV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep8_S188_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3129KVKC/",
"accession": "IGVFFI3129KVKC",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:58:25.210953+00:00",
"file_format": "fastq",
"file_size": 11649218,
"href": "/sequence-files/IGVFFI3129KVKC/@@download/IGVFFI3129KVKC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8e177757-e9c4-46e7-8b54-a273fe230d46/IGVFFI3129KVKC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep1_S181_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4183BLYM/",
"accession": "IGVFFI4183BLYM",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:28:44.968510+00:00",
"file_format": "fastq",
"file_size": 2560668,
"href": "/sequence-files/IGVFFI4183BLYM/@@download/IGVFFI4183BLYM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/2c1d02cd-8398-4b4a-af70-ff405a58e9bc/IGVFFI4183BLYM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep4_S184_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0905GRJE/",
"accession": "IGVFFI0905GRJE",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:31:33.616697+00:00",
"file_format": "fastq",
"file_size": 2329540,
"href": "/sequence-files/IGVFFI0905GRJE/@@download/IGVFFI0905GRJE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c87ce2b3-82dd-412c-9f07-4baadf086941/IGVFFI0905GRJE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinD-PCRrep4_S184_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS6299IJHG/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:08:24.328822+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM1740AUMH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1740AUMH",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinD"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2385DHZO/",
"accession": "IGVFDS2385DHZO",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002796/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:Jurkat"
],
"status": "released",
"summary": "Jurkat",
"term_name": "Jurkat"
}
],
"status": "released",
"summary": "Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-13T09:52:57.879066+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "6aae81e3-c663-4244-a099-4d23cfbc263e"
}