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MeasurementSet
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IGVFDS3473OBBZ
IGVFDS3473OBBZ
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP014_G8_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0731JATE
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
8
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0852LFDD
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
6
417 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0930OHKP
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
5
401 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1069YMPH
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
8
368 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1217PODE
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
5
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1541AMJX
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
7
376 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2179MJCN
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
6
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3175HOGG
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
7
2.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3216LMVP
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
6
390 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4092KFXV
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
7
400 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7659CCOT
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
Donors
16 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO0565OSFT
igvf:corces_donor_BANN1805
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1464XWYC
igvf:corces_donor_BANN1809
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4015EJFT
igvf:corces_donor_BANN0526
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4273OHGB
igvf:corces_donor_BANN0322
female
Homo sapiens
IGVFDO4783EEYU
igvf:corces_donor_BANN1865
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5184YEZB
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP014_G8_ATAC
Ryan Corces, Gladstone Institute UCSF