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INDEXED
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MeasurementSet
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IGVFDS3435SMCA
IGVFDS3435SMCA
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 177)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 430
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
36 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0449GHVP
fastq
reads
R2
8842
Read 2
IGVFFI7344PVRT
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI0479HPGI
fastq
reads
I1
4342
Barcode index
IGVFFI3842RMCY
Illumina NovaSeq 6000
H75F7DSX5
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI1561UVBE
fastq
reads
I1
8842
Barcode index
IGVFFI7344PVRT
Illumina NovaSeq X
22LMVNLT4
736 MB
Jason Buenrostro, Broad
validated
IGVFFI1683TRYM
fastq
reads
R2
9034
Read 2
IGVFFI3757VELY
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI1787GYVT
fastq
reads
R1
8458
Read 1
IGVFFI1628JMBU
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI1886DDSM
fastq
reads
R2
8650
Read 2
IGVFFI6402QBFR
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI1996AQWU
fastq
reads
I1
8746
Barcode index
IGVFFI6720URUZ
Illumina NovaSeq X
22LMVNLT4
735 MB
Jason Buenrostro, Broad
validated
IGVFFI2262DHMH
fastq
reads
R2
8938
Read 2
IGVFFI2051JLJF
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI2455BIUD
fastq
reads
R2
8554
Read 2
IGVFFI8318UESO
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI2734JTDU
fastq
reads
R1
8746
Read 1
IGVFFI6720URUZ
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9301TAMU
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 177)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7061EJDR
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 261
Jason Buenrostro, Broad