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INDEXED
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MeasurementSet
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IGVFDS3423DTHY
IGVFDS3423DTHY
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP018_G5_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0478WRKQ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
5
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0733VSPM
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
7
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0902BCPY
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
6
464 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1195GTVE
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
8
466 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1750GIIR
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257VGLT3
5
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2170NQFG
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
5
462 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2206POCG
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257VGLT3
6
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2260VHQI
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
8
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2553QBGL
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
8
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4577HNMT
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7137MKTX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4812DEVH
igvf:corces_donor_BANN1833
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO7095OCLJ
igvf:corces_donor_BANN9917
female
Homo sapiens
IGVFDO7678VYKP
igvf:corces_donor_BANN1235
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8678BJVO
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP018_G5_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF