{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3368XILR/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3368XILR",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"assay_slims": [
"CRISPR screens"
],
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS3368XILR](/measurement-sets/IGVFDS3368XILR/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS3368XILR/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS3368XILR](/measurement-sets/IGVFDS3368XILR/) has sequence file(s) [IGVFFI5156OSFO](/sequence-files/IGVFFI5156OSFO/), [IGVFFI1191ARLX](/sequence-files/IGVFFI1191ARLX/), [IGVFFI3420WJAY](/sequence-files/IGVFFI3420WJAY/), [IGVFFI0771ANRL](/sequence-files/IGVFFI0771ANRL/), [IGVFFI2198EAKL](/sequence-files/IGVFFI2198EAKL/), [IGVFFI5479XJZA](/sequence-files/IGVFFI5479XJZA/), [IGVFFI4825KBEL](/sequence-files/IGVFFI4825KBEL/), [IGVFFI3609LXNN](/sequence-files/IGVFFI3609LXNN/), [IGVFFI5818JSTT](/sequence-files/IGVFFI5818JSTT/), [IGVFFI0829BVPD](/sequence-files/IGVFFI0829BVPD/), [IGVFFI9987UKVY](/sequence-files/IGVFFI9987UKVY/), [IGVFFI8007IEPP](/sequence-files/IGVFFI8007IEPP/), [IGVFFI9342MINO](/sequence-files/IGVFFI9342MINO/), [IGVFFI6280HGKG](/sequence-files/IGVFFI6280HGKG/), [IGVFFI4152IZVG](/sequence-files/IGVFFI4152IZVG/), [IGVFFI0853AZBE](/sequence-files/IGVFFI0853AZBE/), [IGVFFI3038VQZY](/sequence-files/IGVFFI3038VQZY/), [IGVFFI2980OADM](/sequence-files/IGVFFI2980OADM/), [IGVFFI3703OBMS](/sequence-files/IGVFFI3703OBMS/), [IGVFFI4925NZUI](/sequence-files/IGVFFI4925NZUI/), [IGVFFI7853YVXW](/sequence-files/IGVFFI7853YVXW/), [IGVFFI8926TEGQ](/sequence-files/IGVFFI8926TEGQ/), [IGVFFI0685NWUQ](/sequence-files/IGVFFI0685NWUQ/), [IGVFFI1846DCNK](/sequence-files/IGVFFI1846DCNK/), [IGVFFI1844XLRC](/sequence-files/IGVFFI1844XLRC/), [IGVFFI4928ARVA](/sequence-files/IGVFFI4928ARVA/), [IGVFFI3762CZZM](/sequence-files/IGVFFI3762CZZM/), [IGVFFI1687JJAX](/sequence-files/IGVFFI1687JJAX/), [IGVFFI5602KLDL](/sequence-files/IGVFFI5602KLDL/), [IGVFFI2804OVCJ](/sequence-files/IGVFFI2804OVCJ/), [IGVFFI1314FRFI](/sequence-files/IGVFFI1314FRFI/), [IGVFFI2741ANZC](/sequence-files/IGVFFI2741ANZC/), [IGVFFI4873GQTG](/sequence-files/IGVFFI4873GQTG/), [IGVFFI2546JRGC](/sequence-files/IGVFFI2546JRGC/), [IGVFFI8269VQNH](/sequence-files/IGVFFI8269VQNH/), [IGVFFI6095EDXF](/sequence-files/IGVFFI6095EDXF/), [IGVFFI5730NAZO](/sequence-files/IGVFFI5730NAZO/), [IGVFFI8058QQFV](/sequence-files/IGVFFI8058QQFV/), [IGVFFI3569SSEU](/sequence-files/IGVFFI3569SSEU/), [IGVFFI9692LJMU](/sequence-files/IGVFFI9692LJMU/), [IGVFFI5010AKAO](/sequence-files/IGVFFI5010AKAO/), [IGVFFI1252PONQ](/sequence-files/IGVFFI1252PONQ/), [IGVFFI6139OLGM](/sequence-files/IGVFFI6139OLGM/), [IGVFFI7445HLQR](/sequence-files/IGVFFI7445HLQR/), [IGVFFI8840LDKR](/sequence-files/IGVFFI8840LDKR/), [IGVFFI7763RAMU](/sequence-files/IGVFFI7763RAMU/), [IGVFFI6679CRME](/sequence-files/IGVFFI6679CRME/), [IGVFFI0484JFAZ](/sequence-files/IGVFFI0484JFAZ/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS3368XILR/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3368XILR](/measurement-sets/IGVFDS3368XILR/) has sequence file(s): [IGVFFI5156OSFO](/sequence-files/IGVFFI5156OSFO/), [IGVFFI1191ARLX](/sequence-files/IGVFFI1191ARLX/), [IGVFFI3420WJAY](/sequence-files/IGVFFI3420WJAY/), [IGVFFI0771ANRL](/sequence-files/IGVFFI0771ANRL/), [IGVFFI2198EAKL](/sequence-files/IGVFFI2198EAKL/), [IGVFFI5479XJZA](/sequence-files/IGVFFI5479XJZA/), [IGVFFI4825KBEL](/sequence-files/IGVFFI4825KBEL/), [IGVFFI3609LXNN](/sequence-files/IGVFFI3609LXNN/), [IGVFFI5818JSTT](/sequence-files/IGVFFI5818JSTT/), [IGVFFI0829BVPD](/sequence-files/IGVFFI0829BVPD/), [IGVFFI9987UKVY](/sequence-files/IGVFFI9987UKVY/), [IGVFFI8007IEPP](/sequence-files/IGVFFI8007IEPP/), [IGVFFI9342MINO](/sequence-files/IGVFFI9342MINO/), [IGVFFI6280HGKG](/sequence-files/IGVFFI6280HGKG/), [IGVFFI4152IZVG](/sequence-files/IGVFFI4152IZVG/), [IGVFFI0853AZBE](/sequence-files/IGVFFI0853AZBE/), [IGVFFI3038VQZY](/sequence-files/IGVFFI3038VQZY/), [IGVFFI2980OADM](/sequence-files/IGVFFI2980OADM/), [IGVFFI3703OBMS](/sequence-files/IGVFFI3703OBMS/), [IGVFFI4925NZUI](/sequence-files/IGVFFI4925NZUI/), [IGVFFI7853YVXW](/sequence-files/IGVFFI7853YVXW/), [IGVFFI8926TEGQ](/sequence-files/IGVFFI8926TEGQ/), [IGVFFI0685NWUQ](/sequence-files/IGVFFI0685NWUQ/), [IGVFFI1846DCNK](/sequence-files/IGVFFI1846DCNK/), [IGVFFI1844XLRC](/sequence-files/IGVFFI1844XLRC/), [IGVFFI4928ARVA](/sequence-files/IGVFFI4928ARVA/), [IGVFFI3762CZZM](/sequence-files/IGVFFI3762CZZM/), [IGVFFI1687JJAX](/sequence-files/IGVFFI1687JJAX/), [IGVFFI5602KLDL](/sequence-files/IGVFFI5602KLDL/), [IGVFFI2804OVCJ](/sequence-files/IGVFFI2804OVCJ/), [IGVFFI1314FRFI](/sequence-files/IGVFFI1314FRFI/), [IGVFFI2741ANZC](/sequence-files/IGVFFI2741ANZC/), [IGVFFI4873GQTG](/sequence-files/IGVFFI4873GQTG/), [IGVFFI2546JRGC](/sequence-files/IGVFFI2546JRGC/), [IGVFFI8269VQNH](/sequence-files/IGVFFI8269VQNH/), [IGVFFI6095EDXF](/sequence-files/IGVFFI6095EDXF/), [IGVFFI5730NAZO](/sequence-files/IGVFFI5730NAZO/), [IGVFFI8058QQFV](/sequence-files/IGVFFI8058QQFV/), [IGVFFI3569SSEU](/sequence-files/IGVFFI3569SSEU/), [IGVFFI9692LJMU](/sequence-files/IGVFFI9692LJMU/), [IGVFFI5010AKAO](/sequence-files/IGVFFI5010AKAO/), [IGVFFI1252PONQ](/sequence-files/IGVFFI1252PONQ/), [IGVFFI6139OLGM](/sequence-files/IGVFFI6139OLGM/), [IGVFFI7445HLQR](/sequence-files/IGVFFI7445HLQR/), [IGVFFI8840LDKR](/sequence-files/IGVFFI8840LDKR/), [IGVFFI7763RAMU](/sequence-files/IGVFFI7763RAMU/), [IGVFFI6679CRME](/sequence-files/IGVFFI6679CRME/), [IGVFFI0484JFAZ](/sequence-files/IGVFFI0484JFAZ/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3368XILR/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM5143PODP](/in-vitro-systems/IGVFSM5143PODP/) has in progress subobject construct library set [IGVFDS2374NXLW](/construct-library-sets/IGVFDS2374NXLW/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5143PODP/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5143PODP](/in-vitro-systems/IGVFSM5143PODP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5143PODP/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS3368XILR](/measurement-sets/IGVFDS3368XILR/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS3368XILR/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2374NXLW/",
"accession": "IGVFDS2374NXLW",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4989HPTW/",
"accession": "IGVFDS4989HPTW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-THP1-PE2_Exp1_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-11-30T22:49:02.616605+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI5156OSFO/",
"accession": "IGVFFI5156OSFO",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:49:38.949602+00:00",
"file_format": "fastq",
"file_size": 4135306,
"href": "/sequence-files/IGVFFI5156OSFO/@@download/IGVFFI5156OSFO.fastq.gz",
"md5sum": "2eeb836760a9de413aa70e5cfb32450d",
"s3_uri": "s3://igvf-files/2023/12/05/cf0af2fd-d796-4032-9686-0bcd1ed853a3/IGVFFI5156OSFO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_S58_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1191ARLX/",
"accession": "IGVFFI1191ARLX",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:50:43.847405+00:00",
"file_format": "fastq",
"file_size": 3123810,
"href": "/sequence-files/IGVFFI1191ARLX/@@download/IGVFFI1191ARLX.fastq.gz",
"md5sum": "8bbc1ec2ee08c426f2ce16bed801e20e",
"s3_uri": "s3://igvf-files/2023/12/05/fa3202e4-2b84-41f1-9cf4-9f9de4a81a5d/IGVFFI1191ARLX.fastq.gz",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_S60_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3420WJAY/",
"accession": "IGVFFI3420WJAY",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:52:35.282436+00:00",
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"md5sum": "7ed5b89ca482063aa0236ab126362070",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0771ANRL/",
"accession": "IGVFFI0771ANRL",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:48:06.931434+00:00",
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"href": "/sequence-files/IGVFFI0771ANRL/@@download/IGVFFI0771ANRL.fastq.gz",
"md5sum": "472c640f9a15000f3303887259846ee4",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_S56_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2198EAKL/",
"accession": "IGVFFI2198EAKL",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:47:57.701144+00:00",
"file_format": "fastq",
"file_size": 991108,
"href": "/sequence-files/IGVFFI2198EAKL/@@download/IGVFFI2198EAKL.fastq.gz",
"md5sum": "c9be9579040f90b86c32508a725e7f96",
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"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_S56_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5479XJZA/",
"accession": "IGVFFI5479XJZA",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:46:13.352411+00:00",
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"href": "/sequence-files/IGVFFI5479XJZA/@@download/IGVFFI5479XJZA.fastq.gz",
"md5sum": "35d457f9d451c2478828a8314690aa22",
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"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_S154_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4825KBEL/",
"accession": "IGVFFI4825KBEL",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_R2"
],
"content_type": "reads",
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"md5sum": "ead5c3845f9671806e43ffce0454b94d",
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"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_S57_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3609LXNN/",
"accession": "IGVFFI3609LXNN",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_S58_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5818JSTT/",
"accession": "IGVFFI5818JSTT",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:51:48.315536+00:00",
"file_format": "fastq",
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"href": "/sequence-files/IGVFFI5818JSTT/@@download/IGVFFI5818JSTT.fastq.gz",
"md5sum": "db9f6a3c60aa6a374881fa2b5c4af3a6",
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"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_S152_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0829BVPD/",
"accession": "IGVFFI0829BVPD",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_R2"
],
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"s3_uri": "s3://igvf-files/2023/12/05/5e146b3c-4994-4a20-b564-20928a5ff76f/IGVFFI6679CRME.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_S58_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0484JFAZ/",
"accession": "IGVFFI0484JFAZ",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:45:45.660065+00:00",
"file_format": "fastq",
"file_size": 3118460,
"href": "/sequence-files/IGVFFI0484JFAZ/@@download/IGVFFI0484JFAZ.fastq.gz",
"md5sum": "e443ceb3667dfc4a8901e683c9c59506",
"s3_uri": "s3://igvf-files/2023/12/05/b0fe0171-b49d-467a-9840-b3961392149e/IGVFFI0484JFAZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_S55_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS5031MNRR/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:06:01.623815+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM5143PODP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5143PODP",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-05T20:45:27.269201+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"PPIase F",
"peptidylprolyl isomerase F",
"Cyp-D",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIF",
"CyP-M",
"cyclophilin F",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"cyclophilin 3",
"cyclophilin D",
"rotamase F",
"mitochondrial cyclophilin",
"CypD",
"CYP3"
]
}
],
"uuid": "39070c10-197c-4ece-81fd-4dd6d53f5af5"
}