IGVFDS3361ABEP

released
File Set Type
experimental data
Summary
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Assay Term
Targeted Genes
Sample Summaries
  • HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of FAM3C) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Construct Library Sets
  • IGVFDS1891GTLU guide (sgRNA) library targeting accessible genome regions in many genomic loci
Protocols
Aliases
jesse-engreitz:measurement_CRUDO_FAM3C_Auxin6hrs-FF2-BinC-PCR1-Rep1_S147
jesse-engreitz:measurement_CRUDO_FAM3C_Auxin6hrs-FF2-BinC-PCR2-Rep1_S153
jesse-engreitz:measurement_CRUDO_FAM3C_Auxin6hrs-FF2-BinC-PCR3-Rep1_S201
jesse-engreitz:measurement_CRUDO_FAM3C_Auxin6hrs-FF2-BinC-PCR4-Rep1_S207

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of FAM3C) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Auxiliary Datasets

2 items
Files
AuxiliarySet
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
  • jesse-engreitz:auxiliary_sortparams_CRUDO_FAM3C_Auxin6hrs-FF2
Jesse Engreitz, Stanford
AuxiliarySet
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:auxiliary_CRUDO_FAM3C_Auxin6hrs-FF2-BinC-PCR1-Rep1_S147
  • jesse-engreitz:auxiliary_CRUDO_FAM3C_Auxin6hrs-FF2-BinC-PCR2-Rep1_S153
  • jesse-engreitz:auxiliary_CRUDO_FAM3C_Auxin6hrs-FF2-BinC-PCR3-Rep1_S201
  • jesse-engreitz:auxiliary_CRUDO_FAM3C_Auxin6hrs-FF2-BinC-PCR4-Rep1_S207
Jesse Engreitz, Stanford

Documents

1 item
Page
Description
Type
Download
Preview
overview of experimental design
experimental protocol

Attribution