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IGVFDS3248CAFJ
IGVFDS3248CAFJ
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP002_G3_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0498WICZ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
5
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0733ABYZ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
7
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0743QIUV
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
5
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0990SLQI
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
6
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1826OTSL
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
8
537 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2007XPZD
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
6
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2123HGGJ
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
5
591 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2225ESTU
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
7
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2681BKSP
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
8
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3382JWQD
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
6
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6307OPWX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4438WASY
igvf:corces_donor_BANN1644
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7649CIGW
igvf:corces_donor_BANN9902
female
Homo sapiens
IGVFDO8451NMBP
igvf:corces_donor_BANN1756
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1304MSEA
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP002_G3_RNA
Ryan Corces, Gladstone Institute UCSF