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IGVFDS3248CAFJ
IGVFDS3248CAFJ
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP002_G3_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0498WICZ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
5
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0733ABYZ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
7
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0743QIUV
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
5
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0990SLQI
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
6
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1826OTSL
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
8
537 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2007XPZD
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
6
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2123HGGJ
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
5
591 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2225ESTU
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
7
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2681BKSP
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
8
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3382JWQD
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
6
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6307OPWX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4438WASY
igvf:corces_donor_BANN1644
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7649CIGW
igvf:corces_donor_BANN9902
female
Homo sapiens
IGVFDO8451NMBP
igvf:corces_donor_BANN1756
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1304MSEA
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP002_G3_RNA
Ryan Corces, Gladstone Institute UCSF