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IGVFDS3245PEOK

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 44.0 years) peripheral blood mononuclear cell; ... and 15 more samples
Protocols
Aliases
jimmie-ye:XX21-SC4_snATAC

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
R1
341
Read 1
33 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
341
Read 2
34 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
342
Read 2
34 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
342
Barcode index
12 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
342
4.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
341
Barcode index
12 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
342
Read 1
33 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
343
4.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
343
Read 1
33 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
343
Barcode index
12 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 44.0 years) peripheral blood mononuclear cell; ... and 15 more samples

Donors

17 items
Aliases
  • jimmie-ye:donor_330
male
Homo sapiens
  • jimmie-ye:donor_107
female
Homo sapiens
  • jimmie-ye:donor_135
male
Homo sapiens
  • jimmie-ye:donor_138
male
Homo sapiens
  • jimmie-ye:donor_86
female
Homo sapiens
  • jimmie-ye:donor_112
male
Homo sapiens
  • jimmie-ye:donor_350
female
Homo sapiens
  • jimmie-ye:donor_183
male
Homo sapiens
  • jimmie-ye:donor_338
female
Homo sapiens
  • jimmie-ye:donor_234
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX21-SC4_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF