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IGVFDS3238TJDX
IGVFDS3238TJDX
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP005_G7_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0027KGCT
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JHVLT3
8
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1488SFQC
fastq
reads
I1
2
Illumina NovaSeq X
225LGWLT3
3
492 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2349ERHO
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
225LGWLT3
3
3.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2400JUQO
fastq
reads
I1
2
Illumina NovaSeq X
225LGWLT3
4
506 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3136QSWY
fastq
reads
I2
1
Illumina NovaSeq X
223JHVLT3
7
423 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4003ZZLX
fastq
reads
I2
2
Illumina NovaSeq X
225LGWLT3
3
460 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5446DAVF
fastq
reads
I1
1
Illumina NovaSeq X
223JHVLT3
8
413 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5869JEFB
fastq
reads
R1
2
Read 1
Illumina NovaSeq X
225LGWLT3
4
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6234EWHQ
fastq
reads
I2
2
Illumina NovaSeq X
225LGWLT3
4
475 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7061VFXY
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JHVLT3
7
3.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3222RGNB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO0877AIRF
igvf:corces_donor_BANN0417
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1627RQLG
igvf:corces_donor_BANN1170
male
Homo sapiens
IGVFDO4015EJFT
igvf:corces_donor_BANN0526
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3028RZBD
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP005_G7_ATAC
Ryan Corces, Gladstone Institute UCSF