{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3237WAED",
"aliases": [
"bradley-bernstein:scATAC Lib 2",
"buenrostro-bernstein:scATAC Lib 2"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM3423JQWQ](/primary-cells/IGVFSM3423JQWQ/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM3423JQWQ/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3237WAED](/measurement-sets/IGVFDS3237WAED/) has sequence file(s): [IGVFFI5159VTGO](/sequence-files/IGVFFI5159VTGO/), [IGVFFI3516ACRJ](/sequence-files/IGVFFI3516ACRJ/), [IGVFFI6763USVM](/sequence-files/IGVFFI6763USVM/), [IGVFFI7999EWZR](/sequence-files/IGVFFI7999EWZR/), [IGVFFI3081ZCXR](/sequence-files/IGVFFI3081ZCXR/), [IGVFFI9788OZZQ](/sequence-files/IGVFFI9788OZZQ/), [IGVFFI6294VUGE](/sequence-files/IGVFFI6294VUGE/), [IGVFFI4244WKSL](/sequence-files/IGVFFI4244WKSL/), [IGVFFI4935JBMP](/sequence-files/IGVFFI4935JBMP/), [IGVFFI3084PVRY](/sequence-files/IGVFFI3084PVRY/), [IGVFFI2461RELR](/sequence-files/IGVFFI2461RELR/), [IGVFFI2251UCNR](/sequence-files/IGVFFI2251UCNR/), [IGVFFI1389MJNK](/sequence-files/IGVFFI1389MJNK/), [IGVFFI8821LWCV](/sequence-files/IGVFFI8821LWCV/), [IGVFFI9063TNOH](/sequence-files/IGVFFI9063TNOH/), [IGVFFI0854LWOO](/sequence-files/IGVFFI0854LWOO/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3237WAED/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS3237WAED](/measurement-sets/IGVFDS3237WAED/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS3237WAED/"
}
]
},
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},
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},
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{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 1), female, Homo sapiens (19 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:25:06.268998+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "11f68a56-ae46-4102-aee7-2053b37ff3f1"
}