{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3207ABGV",
"aliases": [
"bradley-bernstein:scATAC Lib 27",
"buenrostro-bernstein:scATAC Lib 27"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM9099ITYD](/primary-cells/IGVFSM9099ITYD/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM9099ITYD/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3207ABGV](/measurement-sets/IGVFDS3207ABGV/) has sequence file(s): [IGVFFI8919GOCK](/sequence-files/IGVFFI8919GOCK/), [IGVFFI8421OLNE](/sequence-files/IGVFFI8421OLNE/), [IGVFFI4055XLKZ](/sequence-files/IGVFFI4055XLKZ/), [IGVFFI6824LRRP](/sequence-files/IGVFFI6824LRRP/), [IGVFFI2948ULLR](/sequence-files/IGVFFI2948ULLR/), [IGVFFI9883BBFJ](/sequence-files/IGVFFI9883BBFJ/), [IGVFFI2094DIMZ](/sequence-files/IGVFFI2094DIMZ/), [IGVFFI0651FGID](/sequence-files/IGVFFI0651FGID/), [IGVFFI2001BMGB](/sequence-files/IGVFFI2001BMGB/), [IGVFFI8733OPDK](/sequence-files/IGVFFI8733OPDK/), [IGVFFI2509QEDC](/sequence-files/IGVFFI2509QEDC/), [IGVFFI8462OWEK](/sequence-files/IGVFFI8462OWEK/), [IGVFFI3273YVOU](/sequence-files/IGVFFI3273YVOU/), [IGVFFI4729MANA](/sequence-files/IGVFFI4729MANA/), [IGVFFI4054UIAP](/sequence-files/IGVFFI4054UIAP/), [IGVFFI9023JSRW](/sequence-files/IGVFFI9023JSRW/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3207ABGV/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS3207ABGV](/measurement-sets/IGVFDS3207ABGV/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS3207ABGV/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 5), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:30:42.054900+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "9e5b966a-3623-481c-a339-fdf146e0d432"
}