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IGVFDS3169TEEK

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf1_10x2

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R3
1
Read 2
2257H3LT3
7
11 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
2257H3LT3
7
6.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
2257H3LT3
8
6.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
2257H3LT3
8
11 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
2257H3LT3
7
2.4 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
2257H3LT3
7
11 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
2257H3LT3
8
11 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
2257H3LT3
8
2.4 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples

Donors

5 items
Aliases
  • igvf:donor_of_HUDEP-2
unspecified
Homo sapiens
  • igvf:donor_of_HL-60
female
Homo sapiens
  • igvf:donor_of_HAP-1
male
Homo sapiens
  • igvf:donor_of_K562
female
Homo sapiens
  • igvf:donor_of_U2OS
female
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf1_analysis_set
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf1_10x2
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf1_10x2
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford