Home

IGVFDS3164XQLE

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X045_G1_RNA

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
I2
1
H5VKTDSX7
2
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
H5VKTDSX7
2
6.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
H5VKTDSX7
2
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
H5VKTDSX7
2
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1569
male
Homo sapiens
  • igvf:corces_donor_BANN0215
female
Homo sapiens
  • igvf:corces_donor_BANN1256
female
Homo sapiens
  • igvf:corces_donor_BANN1037
female
Homo sapiens
  • igvf:corces_donor_BANN0413
male
Homo sapiens
  • igvf:corces_donor_BANN1647
male
Homo sapiens
  • igvf:corces_donor_BANN0002
male
Homo sapiens
  • igvf:corces_donor_BANN0325
male
Homo sapiens
  • igvf:corces_donor_BANN1833
male
Homo sapiens
  • igvf:corces_donor_BANN1830
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X045_G1_ATAC
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF