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INDEXED
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MeasurementSet
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IGVFDS3141FRLK
IGVFDS3141FRLK
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X042_G4_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1376YADR
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
8
103 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1748ETYF
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
5
104 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3119VRZI
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
7
425 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3265QRDD
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
7
424 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3943JCLK
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
8
412 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4048CFEH
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
8
230 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4407WJXU
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
6
406 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5340DQGR
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
7
106 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5689NHNU
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
8
412 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6206DKDX
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
7
236 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6255JGZM
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0565OSFT
igvf:corces_donor_BANN1805
male
Homo sapiens
IGVFDO0698ZMAQ
igvf:corces_donor_BANN1569
male
Homo sapiens
IGVFDO0877AIRF
igvf:corces_donor_BANN0417
male
Homo sapiens
IGVFDO0909BNTN
igvf:corces_donor_BANN1554
male
Homo sapiens
IGVFDO1193ADXF
igvf:corces_donor_BANN1584
male
Homo sapiens
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO3971UIZC
igvf:corces_donor_BANN0217
female
Homo sapiens
IGVFDO4170HAEN
igvf:corces_donor_BANN1864
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO7315DYIP
igvf:corces_donor_BANN1089
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6532IRJT
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X042_G4_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF