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INDEXED
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MeasurementSet
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IGVFDS3084WPPQ
IGVFDS3084WPPQ
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 188)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 493
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
36 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0196PMXP
fastq
reads
I1
8785
Barcode index
IGVFFI9951EYJV
Illumina NovaSeq X
22LMVNLT4
825 MB
Jason Buenrostro, Broad
validated
IGVFFI0254WWXD
fastq
reads
I1
9073
Barcode index
IGVFFI0737CNNM
Illumina NovaSeq X
22LMVNLT4
823 MB
Jason Buenrostro, Broad
validated
IGVFFI0557MVGY
fastq
reads
I1
993
Barcode index
IGVFFI1133URGN
Illumina NovaSeq X
22773CLT3
843 MB
Jason Buenrostro, Broad
validated
IGVFFI1651EWJE
fastq
reads
I1
1035
Barcode index
IGVFFI2979ELCN
Illumina NovaSeq X
22773CLT3
843 MB
Jason Buenrostro, Broad
validated
IGVFFI2296YZBM
fastq
reads
R1
8593
Read 1
IGVFFI9318FQBN
Illumina NovaSeq X
22LMVNLT4
1.4 GB
Jason Buenrostro, Broad
validated
IGVFFI2899XCYZ
fastq
reads
I1
1077
Barcode index
IGVFFI8384YMFT
Illumina NovaSeq X
22773CLT3
828 MB
Jason Buenrostro, Broad
validated
IGVFFI3261JKMH
fastq
reads
R2
993
Read 2
IGVFFI1133URGN
Illumina NovaSeq X
22773CLT3
960 MB
Jason Buenrostro, Broad
validated
IGVFFI3268GRUW
fastq
reads
R2
8497
Read 2
IGVFFI7110UQHB
Illumina NovaSeq X
22LMVNLT4
1.4 GB
Jason Buenrostro, Broad
validated
IGVFFI3796SCUA
fastq
reads
I1
8881
Barcode index
IGVFFI2358KHMM
Illumina NovaSeq X
22LMVNLT4
829 MB
Jason Buenrostro, Broad
validated
IGVFFI5050NYGN
fastq
reads
R2
9169
Read 2
IGVFFI2996RAEE
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9051KVVO
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 188)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6734NTYO
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 448
Jason Buenrostro, Broad