{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS3083RFCQ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3083RFCQ",
"aliases": [
"igvf:corces_measurementSet_X041_G1_ATAC"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002762/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-nucleus ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [18594154-e391-440a-8a78-4125804a3c04](/phenotypic-features/18594154-e391-440a-8a78-4125804a3c04/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [66fe5873-8396-48ca-996e-7fae115d714b](/phenotypic-features/66fe5873-8396-48ca-996e-7fae115d714b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [2f322a5f-1431-487e-8ca5-7646bb63ac0b](/phenotypic-features/2f322a5f-1431-487e-8ca5-7646bb63ac0b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [aa4cf396-805f-4d46-a35a-3f5592ddc346](/phenotypic-features/aa4cf396-805f-4d46-a35a-3f5592ddc346/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [73e45a6f-b113-48dc-b388-d74a2ffb2266](/phenotypic-features/73e45a6f-b113-48dc-b388-d74a2ffb2266/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [5df41812-ca61-438a-8942-0827a98215bf](/phenotypic-features/5df41812-ca61-438a-8942-0827a98215bf/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [ab0c4c39-15a5-415a-891b-05411b5bdfc6](/phenotypic-features/ab0c4c39-15a5-415a-891b-05411b5bdfc6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [46b3e3ac-e90e-4f3c-8941-5af5fceb9b99](/phenotypic-features/46b3e3ac-e90e-4f3c-8941-5af5fceb9b99/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [1ef24011-d1f8-48ff-9e1f-555e57610cd6](/phenotypic-features/1ef24011-d1f8-48ff-9e1f-555e57610cd6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [eb56d44e-c3b9-4e22-aff7-d12c6ac5fa85](/phenotypic-features/eb56d44e-c3b9-4e22-aff7-d12c6ac5fa85/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [d0628ba8-dcc8-4c05-bf8e-08dbbb919b2f](/phenotypic-features/d0628ba8-dcc8-4c05-bf8e-08dbbb919b2f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [ae18045e-aea2-45bb-b765-de3f2b965b59](/phenotypic-features/ae18045e-aea2-45bb-b765-de3f2b965b59/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0966KXTA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [6a401974-b8df-482a-b734-fab7683a6f39](/phenotypic-features/6a401974-b8df-482a-b734-fab7683a6f39/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0966KXTA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [a5b8945b-e2c3-49f2-96d9-e9c91bd1fe1c](/phenotypic-features/a5b8945b-e2c3-49f2-96d9-e9c91bd1fe1c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0966KXTA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [d72f23fa-592d-4693-ab03-1160f89e3d5b](/phenotypic-features/d72f23fa-592d-4693-ab03-1160f89e3d5b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0966KXTA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4273OHGB](/human-donors/IGVFDO4273OHGB/) has in progress subobject phenotypic feature [78a7c349-10a5-4b5a-9661-21b6831612a7](/phenotypic-features/78a7c349-10a5-4b5a-9661-21b6831612a7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4273OHGB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4273OHGB](/human-donors/IGVFDO4273OHGB/) has in progress subobject phenotypic feature [a8a7eb19-35fc-4266-87cf-32ecd8e25f0b](/phenotypic-features/a8a7eb19-35fc-4266-87cf-32ecd8e25f0b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4273OHGB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4273OHGB](/human-donors/IGVFDO4273OHGB/) has in progress subobject phenotypic feature [3e3c67a3-add2-494d-a64d-c47dd7d5c897](/phenotypic-features/3e3c67a3-add2-494d-a64d-c47dd7d5c897/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4273OHGB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4273OHGB](/human-donors/IGVFDO4273OHGB/) has in progress subobject phenotypic feature [a04cdee4-28e8-4690-acb4-48bab45f7927](/phenotypic-features/a04cdee4-28e8-4690-acb4-48bab45f7927/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4273OHGB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4273OHGB](/human-donors/IGVFDO4273OHGB/) has in progress subobject phenotypic feature [b680dc57-e349-4ea9-8cb8-5c5426aaad31](/phenotypic-features/b680dc57-e349-4ea9-8cb8-5c5426aaad31/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4273OHGB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3795BUZW](/human-donors/IGVFDO3795BUZW/) has in progress subobject phenotypic feature [05b2e6f0-0942-4a97-ba30-ab604675cecf](/phenotypic-features/05b2e6f0-0942-4a97-ba30-ab604675cecf/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3795BUZW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3795BUZW](/human-donors/IGVFDO3795BUZW/) has in progress subobject phenotypic feature [52075c15-8fbc-43f4-8ea7-daca38913ca8](/phenotypic-features/52075c15-8fbc-43f4-8ea7-daca38913ca8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3795BUZW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3795BUZW](/human-donors/IGVFDO3795BUZW/) has in progress subobject phenotypic feature [9a07089a-e55f-4366-921e-fc24aeb5118a](/phenotypic-features/9a07089a-e55f-4366-921e-fc24aeb5118a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3795BUZW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3795BUZW](/human-donors/IGVFDO3795BUZW/) has in progress subobject phenotypic feature [3190b852-4196-43c9-9da6-03869014b3bb](/phenotypic-features/3190b852-4196-43c9-9da6-03869014b3bb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3795BUZW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [0cd59ebe-1db1-4f78-94b0-874fcf8fe239](/phenotypic-features/0cd59ebe-1db1-4f78-94b0-874fcf8fe239/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [fd6110d1-a29e-4225-a5e6-27a7614bcdd7](/phenotypic-features/fd6110d1-a29e-4225-a5e6-27a7614bcdd7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [66e32efb-7f85-4402-a04c-fece8128ee8e](/phenotypic-features/66e32efb-7f85-4402-a04c-fece8128ee8e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [5ec82856-d387-4727-9473-c60628ddce27](/phenotypic-features/5ec82856-d387-4727-9473-c60628ddce27/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [a945aea6-1bca-4a51-a030-e44b27e81d2a](/phenotypic-features/a945aea6-1bca-4a51-a030-e44b27e81d2a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [42c6269c-25ee-4326-b51c-086f9665bf75](/phenotypic-features/42c6269c-25ee-4326-b51c-086f9665bf75/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8344LUQZ](/human-donors/IGVFDO8344LUQZ/) has in progress subobject phenotypic feature [d900f184-9bf7-4b9c-8d20-0d40c6b16435](/phenotypic-features/d900f184-9bf7-4b9c-8d20-0d40c6b16435/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8344LUQZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8344LUQZ](/human-donors/IGVFDO8344LUQZ/) has in progress subobject phenotypic feature [cd2525eb-a90d-47c1-a053-cd3376cd23d1](/phenotypic-features/cd2525eb-a90d-47c1-a053-cd3376cd23d1/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8344LUQZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8344LUQZ](/human-donors/IGVFDO8344LUQZ/) has in progress subobject phenotypic feature [1961d5fc-9987-47f0-8cdf-9dae2203185c](/phenotypic-features/1961d5fc-9987-47f0-8cdf-9dae2203185c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8344LUQZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8344LUQZ](/human-donors/IGVFDO8344LUQZ/) has in progress subobject phenotypic feature [ef944fd3-8635-4e0f-bad8-48136e7c6408](/phenotypic-features/ef944fd3-8635-4e0f-bad8-48136e7c6408/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8344LUQZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8344LUQZ](/human-donors/IGVFDO8344LUQZ/) has in progress subobject phenotypic feature [93e7b543-5ab9-4cb4-8a10-9d9a7b950b6b](/phenotypic-features/93e7b543-5ab9-4cb4-8a10-9d9a7b950b6b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8344LUQZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8344LUQZ](/human-donors/IGVFDO8344LUQZ/) has in progress subobject phenotypic feature [025a53bb-7c23-42cb-9752-3516f17f6187](/phenotypic-features/025a53bb-7c23-42cb-9752-3516f17f6187/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8344LUQZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5228HTJC](/human-donors/IGVFDO5228HTJC/) has in progress subobject phenotypic feature [30f0b56e-d6b3-43e1-8a81-6a16bb0e28ee](/phenotypic-features/30f0b56e-d6b3-43e1-8a81-6a16bb0e28ee/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5228HTJC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5228HTJC](/human-donors/IGVFDO5228HTJC/) has in progress subobject phenotypic feature [6398d5ed-9d64-42a5-bf1a-e4d9e52057b5](/phenotypic-features/6398d5ed-9d64-42a5-bf1a-e4d9e52057b5/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5228HTJC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5228HTJC](/human-donors/IGVFDO5228HTJC/) has in progress subobject phenotypic feature [b52127d9-b46f-4047-b2f5-3cd75d0933f0](/phenotypic-features/b52127d9-b46f-4047-b2f5-3cd75d0933f0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5228HTJC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5228HTJC](/human-donors/IGVFDO5228HTJC/) has in progress subobject phenotypic feature [f3c96e1e-630f-47c2-8e2d-5c9ba8d18598](/phenotypic-features/f3c96e1e-630f-47c2-8e2d-5c9ba8d18598/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5228HTJC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5228HTJC](/human-donors/IGVFDO5228HTJC/) has in progress subobject phenotypic feature [72f27db2-904b-4967-b919-f7c013e2eec8](/phenotypic-features/72f27db2-904b-4967-b919-f7c013e2eec8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5228HTJC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3471KCPD](/human-donors/IGVFDO3471KCPD/) has in progress subobject phenotypic feature [b4caab48-6ad6-435d-b7d8-5fd75adcb6f9](/phenotypic-features/b4caab48-6ad6-435d-b7d8-5fd75adcb6f9/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3471KCPD/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3471KCPD](/human-donors/IGVFDO3471KCPD/) has in progress subobject phenotypic feature [7cef33e4-2883-4036-9171-f05b4ad41d82](/phenotypic-features/7cef33e4-2883-4036-9171-f05b4ad41d82/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3471KCPD/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3471KCPD](/human-donors/IGVFDO3471KCPD/) has in progress subobject phenotypic feature [ce38b3de-52ef-4922-90a9-554f69f41f83](/phenotypic-features/ce38b3de-52ef-4922-90a9-554f69f41f83/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3471KCPD/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3471KCPD](/human-donors/IGVFDO3471KCPD/) has in progress subobject phenotypic feature [bf330bc2-8a2a-4dc7-8aeb-f572a5fe9f1d](/phenotypic-features/bf330bc2-8a2a-4dc7-8aeb-f572a5fe9f1d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3471KCPD/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3471KCPD](/human-donors/IGVFDO3471KCPD/) has in progress subobject phenotypic feature [63252125-58f4-4e29-91f3-4103a1645797](/phenotypic-features/63252125-58f4-4e29-91f3-4103a1645797/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3471KCPD/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3471KCPD](/human-donors/IGVFDO3471KCPD/) has in progress subobject phenotypic feature [cb846c22-2896-4683-83db-d4839ff90635](/phenotypic-features/cb846c22-2896-4683-83db-d4839ff90635/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3471KCPD/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [9109c230-248d-47c3-9cff-73daf2db597a](/phenotypic-features/9109c230-248d-47c3-9cff-73daf2db597a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [4a89566b-e6ee-4846-b48a-601a52c201ab](/phenotypic-features/4a89566b-e6ee-4846-b48a-601a52c201ab/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [3f62e325-e003-4f54-a5ed-1e5ab90bffbb](/phenotypic-features/3f62e325-e003-4f54-a5ed-1e5ab90bffbb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [fc1de29e-57a0-4cdb-ac92-597485b27795](/phenotypic-features/fc1de29e-57a0-4cdb-ac92-597485b27795/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [b1bcbcb3-200c-4716-b4cc-8cc2cc3ee208](/phenotypic-features/b1bcbcb3-200c-4716-b4cc-8cc2cc3ee208/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [4fa3d51f-faa7-48b9-b76b-58bbb23ba4cb](/phenotypic-features/4fa3d51f-faa7-48b9-b76b-58bbb23ba4cb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a393f393-5482-4671-b57c-fe8bfe6e8927](/phenotypic-features/a393f393-5482-4671-b57c-fe8bfe6e8927/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a0a18d18-51af-4fbc-9a8c-baa6f6b720cd](/phenotypic-features/a0a18d18-51af-4fbc-9a8c-baa6f6b720cd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [48e0e9c9-7759-4913-8219-2471979d793e](/phenotypic-features/48e0e9c9-7759-4913-8219-2471979d793e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [c2f14d65-c7f8-46d1-8093-818906473518](/phenotypic-features/c2f14d65-c7f8-46d1-8093-818906473518/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [2c783c74-fa89-4766-b218-3e0da350c6da](/phenotypic-features/2c783c74-fa89-4766-b218-3e0da350c6da/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [5206796d-df44-42d5-a495-92cfc4ef55c6](/phenotypic-features/5206796d-df44-42d5-a495-92cfc4ef55c6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0698ZMAQ](/human-donors/IGVFDO0698ZMAQ/) has in progress subobject phenotypic feature [2697c4cf-ae1b-4527-94d7-468cc278827c](/phenotypic-features/2697c4cf-ae1b-4527-94d7-468cc278827c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0698ZMAQ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0698ZMAQ](/human-donors/IGVFDO0698ZMAQ/) has in progress subobject phenotypic feature [c2348b93-2f59-4084-a1e7-62d405d2d45d](/phenotypic-features/c2348b93-2f59-4084-a1e7-62d405d2d45d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0698ZMAQ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0698ZMAQ](/human-donors/IGVFDO0698ZMAQ/) has in progress subobject phenotypic feature [04422160-4b28-4f05-81b5-5176e3d6f0fe](/phenotypic-features/04422160-4b28-4f05-81b5-5176e3d6f0fe/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0698ZMAQ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0698ZMAQ](/human-donors/IGVFDO0698ZMAQ/) has in progress subobject phenotypic feature [4e7ec6ce-25f7-4406-95f3-0908c9636077](/phenotypic-features/4e7ec6ce-25f7-4406-95f3-0908c9636077/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0698ZMAQ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0698ZMAQ](/human-donors/IGVFDO0698ZMAQ/) has in progress subobject phenotypic feature [9c734026-0ef7-4063-b4fb-c186851d22b7](/phenotypic-features/9c734026-0ef7-4063-b4fb-c186851d22b7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0698ZMAQ/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS3083RFCQ](/measurement-sets/IGVFDS3083RFCQ/) has sequence file(s): [IGVFFI0717HJSD](/sequence-files/IGVFFI0717HJSD/), [IGVFFI0955PVNW](/sequence-files/IGVFFI0955PVNW/), [IGVFFI7013TCTP](/sequence-files/IGVFFI7013TCTP/), [IGVFFI4242CTKU](/sequence-files/IGVFFI4242CTKU/), [IGVFFI2486LKJE](/sequence-files/IGVFFI2486LKJE/), [IGVFFI1553JHNG](/sequence-files/IGVFFI1553JHNG/), [IGVFFI8874MAWH](/sequence-files/IGVFFI8874MAWH/), [IGVFFI9946NPPU](/sequence-files/IGVFFI9946NPPU/), [IGVFFI7960YSGU](/sequence-files/IGVFFI7960YSGU/), [IGVFFI1737LBVN](/sequence-files/IGVFFI1737LBVN/), [IGVFFI1524WZDS](/sequence-files/IGVFFI1524WZDS/), [IGVFFI7108MRND](/sequence-files/IGVFFI7108MRND/), [IGVFFI6264ENKZ](/sequence-files/IGVFFI6264ENKZ/), [IGVFFI2618NNTO](/sequence-files/IGVFFI2618NNTO/), [IGVFFI1616CXHX](/sequence-files/IGVFFI1616CXHX/), [IGVFFI3848ORQC](/sequence-files/IGVFFI3848ORQC/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS3083RFCQ/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS3083RFCQ](/measurement-sets/IGVFDS3083RFCQ/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS3083RFCQ/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS3083RFCQ](/measurement-sets/IGVFDS3083RFCQ/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS3083RFCQ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": false,
"creation_timestamp": "2025-03-19T19:45:58.260415+00:00",
"data_use_limitation_summaries": [
"No limitations"
],
"donors": [
{
"@id": "/human-donors/IGVFDO8344LUQZ/",
"accession": "IGVFDO8344LUQZ",
"aliases": [
"igvf:corces_donor_BANN0621"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5228HTJC/",
"accession": "IGVFDO5228HTJC",
"aliases": [
"igvf:corces_donor_BANN1839"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3795BUZW/",
"accession": "IGVFDO3795BUZW",
"aliases": [
"igvf:corces_donor_BANN1311"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3471KCPD/",
"accession": "IGVFDO3471KCPD",
"aliases": [
"igvf:corces_donor_BANN1647"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1469WVVS/",
"accession": "IGVFDO1469WVVS",
"aliases": [
"igvf:corces_donor_BANN1063"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4170HAEN/",
"accession": "IGVFDO4170HAEN",
"aliases": [
"igvf:corces_donor_BANN1864"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8458OKEW/",
"accession": "IGVFDO8458OKEW",
"aliases": [
"igvf:corces_donor_BANN1623"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9211DWXZ/",
"accession": "IGVFDO9211DWXZ",
"aliases": [
"igvf:corces_donor_BANN1352"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8155MCUV/",
"accession": "IGVFDO8155MCUV",
"aliases": [
"igvf:corces_donor_BANN0437"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4273OHGB/",
"accession": "IGVFDO4273OHGB",
"aliases": [
"igvf:corces_donor_BANN0322"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0966KXTA/",
"accession": "IGVFDO0966KXTA",
"aliases": [
"igvf:corces_donor_BANN0138"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0698ZMAQ/",
"accession": "IGVFDO0698ZMAQ",
"aliases": [
"igvf:corces_donor_BANN1569"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI0717HJSD/",
"accession": "IGVFFI0717HJSD",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L003_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:37.730949+00:00",
"file_format": "fastq",
"file_size": 2513692926,
"href": "/sequence-files/IGVFFI0717HJSD/@@download/IGVFFI0717HJSD.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/a1426923-bef8-42d7-83fa-0e4dbfb578bb/IGVFFI0717HJSD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L003_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0955PVNW/",
"accession": "IGVFFI0955PVNW",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L002_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:26.721952+00:00",
"file_format": "fastq",
"file_size": 2534903374,
"href": "/sequence-files/IGVFFI0955PVNW/@@download/IGVFFI0955PVNW.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/c4eca9ac-8fbb-4ded-a806-2e2cc84acbeb/IGVFFI0955PVNW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L002_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7013TCTP/",
"accession": "IGVFFI7013TCTP",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L002_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:29.749668+00:00",
"file_format": "fastq",
"file_size": 1413456905,
"href": "/sequence-files/IGVFFI7013TCTP/@@download/IGVFFI7013TCTP.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/bc339b1f-91ae-44c2-9045-61414d4812c5/IGVFFI7013TCTP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L002_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4242CTKU/",
"accession": "IGVFFI4242CTKU",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L002_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:32.513367+00:00",
"file_format": "fastq",
"file_size": 2534964814,
"href": "/sequence-files/IGVFFI4242CTKU/@@download/IGVFFI4242CTKU.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/cb2b9a7f-b5eb-4d43-81e8-968b92a61c4f/IGVFFI4242CTKU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L002_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2486LKJE/",
"accession": "IGVFFI2486LKJE",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L003_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:40.452435+00:00",
"file_format": "fastq",
"file_size": 1397419674,
"href": "/sequence-files/IGVFFI2486LKJE/@@download/IGVFFI2486LKJE.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/ced7e69a-4df6-46e0-b2f2-4d5f211c96d2/IGVFFI2486LKJE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L003_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1553JHNG/",
"accession": "IGVFFI1553JHNG",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L003_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:35.199923+00:00",
"file_format": "fastq",
"file_size": 631540888,
"href": "/sequence-files/IGVFFI1553JHNG/@@download/IGVFFI1553JHNG.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/ed8ce8d5-8abf-4942-b25e-2d904ba99594/IGVFFI1553JHNG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L003_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8874MAWH/",
"accession": "IGVFFI8874MAWH",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L003_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:43.060365+00:00",
"file_format": "fastq",
"file_size": 2512423733,
"href": "/sequence-files/IGVFFI8874MAWH/@@download/IGVFFI8874MAWH.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/3945ef79-ae3b-4016-8e7f-52a100472f6b/IGVFFI8874MAWH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L003_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9946NPPU/",
"accession": "IGVFFI9946NPPU",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L004_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:53.809061+00:00",
"file_format": "fastq",
"file_size": 2485417817,
"href": "/sequence-files/IGVFFI9946NPPU/@@download/IGVFFI9946NPPU.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/df19dbe4-7203-4bad-9de9-b19f1af0ed50/IGVFFI9946NPPU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L004_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7960YSGU/",
"accession": "IGVFFI7960YSGU",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L001_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:17.294850+00:00",
"file_format": "fastq",
"file_size": 1380475496,
"href": "/sequence-files/IGVFFI7960YSGU/@@download/IGVFFI7960YSGU.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/1d704440-2f11-49ae-a7e8-3730eba51794/IGVFFI7960YSGU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1737LBVN/",
"accession": "IGVFFI1737LBVN",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L004_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:45.567821+00:00",
"file_format": "fastq",
"file_size": 622399427,
"href": "/sequence-files/IGVFFI1737LBVN/@@download/IGVFFI1737LBVN.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/c45afb55-186f-4500-a3f5-6cde86aff6d5/IGVFFI1737LBVN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L004_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1524WZDS/",
"accession": "IGVFFI1524WZDS",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L001_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:21.851031+00:00",
"file_format": "fastq",
"file_size": 2476044867,
"href": "/sequence-files/IGVFFI1524WZDS/@@download/IGVFFI1524WZDS.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/1fd0487a-8a8a-47bc-82ec-35ea8e2c9789/IGVFFI1524WZDS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L001_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7108MRND/",
"accession": "IGVFFI7108MRND",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L001_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:12.380396+00:00",
"file_format": "fastq",
"file_size": 623981986,
"href": "/sequence-files/IGVFFI7108MRND/@@download/IGVFFI7108MRND.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/c704b19b-929f-4309-bee0-cd9f462f6586/IGVFFI7108MRND.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6264ENKZ/",
"accession": "IGVFFI6264ENKZ",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L002_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:24.527964+00:00",
"file_format": "fastq",
"file_size": 639585537,
"href": "/sequence-files/IGVFFI6264ENKZ/@@download/IGVFFI6264ENKZ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/51003ead-2c2b-478e-a918-6028dec10bb6/IGVFFI6264ENKZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L002_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2618NNTO/",
"accession": "IGVFFI2618NNTO",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L001_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:14.219707+00:00",
"file_format": "fastq",
"file_size": 2472943199,
"href": "/sequence-files/IGVFFI2618NNTO/@@download/IGVFFI2618NNTO.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/f0516dab-f7f7-40da-b1aa-da2d9d9f4b44/IGVFFI2618NNTO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1616CXHX/",
"accession": "IGVFFI1616CXHX",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L004_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:48.199987+00:00",
"file_format": "fastq",
"file_size": 2487043106,
"href": "/sequence-files/IGVFFI1616CXHX/@@download/IGVFFI1616CXHX.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/0e9b2ab4-a88a-44f1-8935-1d66f0b1a8fa/IGVFFI1616CXHX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L004_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3848ORQC/",
"accession": "IGVFFI3848ORQC",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X041_G1_P041_L004_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T03:25:50.768079+00:00",
"file_format": "fastq",
"file_size": 1379438978,
"href": "/sequence-files/IGVFFI3848ORQC/@@download/IGVFFI3848ORQC.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/20/141a8398-8aac-46af-9143-9182cbd7163f/IGVFFI3848ORQC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_X041_G1_L001_P041_S11_L004_R2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI7587TJLC/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS1691KPWU/",
"accession": "IGVFDS1691KPWU",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1990PUGQ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1990PUGQ",
"aliases": [
"igvf:corces_multiplexedSample_X041_G1"
],
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"status": "in progress",
"term_name": "multiple sclerosis"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "putamen",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "substantia nigra",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002129/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "cerebellar cortex",
"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "middle temporal gyrus",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"submitted_files_timestamp": "2025-03-20T03:25:12.380396+00:00",
"summary": "single-nucleus ATAC-seq (10x multiome)",
"uuid": "170cedbb-3d10-413c-ba38-200932bb6aef"
}