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IGVFDS3080TIMY

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X032_G1_ATAC

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R3
1
Read 2
HV7VHDSX5
3
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
HV7VHDSX5
3
4.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
HV7VHDSX5
3
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
HV7VHDSX5
3
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN0002
male
Homo sapiens
  • igvf:corces_donor_BANN1083
male
Homo sapiens
  • igvf:corces_donor_BANN1830
female
Homo sapiens
  • igvf:corces_donor_BANN2005
male
Homo sapiens
  • igvf:corces_donor_BANN1639
male
Homo sapiens
  • igvf:corces_donor_BANN9902
female
Homo sapiens
  • igvf:corces_donor_BANN1235
male
Homo sapiens
  • igvf:corces_donor_BANN0341
male
Homo sapiens
  • igvf:corces_donor_BANN1812
female
Homo sapiens
  • igvf:corces_donor_BANN0315
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X032_G1_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF