Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS3046IPKB
IGVFDS3046IPKB
preview
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X046_G3_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0951KTTB
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
H5VKTDSX7
3
7.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1507BAVT
fastq
reads
I1
1
Illumina NovaSeq 6000
H5VKTDSX7
3
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7171VEAN
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
H5VKTDSX7
3
8.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8281KNEL
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
H5VKTDSX7
3
4.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM5266CSDR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0182KXUM
igvf:corces_donor_BANN9938
female
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO2559GIIZ
igvf:corces_donor_BANN2103
male
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO4103FHPT
igvf:corces_donor_BANN9702
male
Homo sapiens
IGVFDO5228HTJC
igvf:corces_donor_BANN1839
female
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO7315DYIP
igvf:corces_donor_BANN1089
female
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
IGVFDO8458OKEW
igvf:corces_donor_BANN1623
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5369HKHB
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X046_G3_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF