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INDEXED
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MeasurementSet
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IGVFDS3035QFKU
IGVFDS3035QFKU
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP011_G8_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0173OSIT
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
225CCCLT3
7
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0215VWKE
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
225CCCLT3
7
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0918AZMJ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
225CCCLT3
8
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1210SXQE
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
225CCCLT3
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1971VZNJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
225CCCLT3
5
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3837GOZL
fastq
reads
I1
1
Illumina NovaSeq X
225CCCLT3
7
529 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4438QVSK
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
225CCCLT3
7
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5359GFSG
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
225CCCLT3
8
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5523KLEG
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
225CCCLT3
6
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6095DSDK
fastq
reads
I1
1
Illumina NovaSeq X
225CCCLT3
6
496 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3747QRCH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
Donors
16 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0698ZMAQ
igvf:corces_donor_BANN1569
male
Homo sapiens
IGVFDO0773NPOH
igvf:corces_donor_BANN0560
male
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO3497MBPK
igvf:corces_donor_BANN0002
male
Homo sapiens
IGVFDO3501RYHX
igvf:corces_donor_BANN1959
male
Homo sapiens
IGVFDO5228HTJC
igvf:corces_donor_BANN1839
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6373YBDI
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP011_G8_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF