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IGVFDS2993TBQL
IGVFDS2993TBQL
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP009_G7_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
15 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0008KEES
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223HCCLT3
2
3.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0329MHIH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HCCLT3
4
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0716SVOY
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223HCCLT3
1
3.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2311ETRB
fastq
reads
I2
1
Illumina NovaSeq X
223HCCLT3
4
387 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2576IAAW
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HCCLT3
3
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3318SLUW
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HCCLT3
1
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3362GRAL
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223HCCLT3
3
3.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4355CCXD
fastq
reads
I2
1
Illumina NovaSeq X
223HCCLT3
3
389 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4506GEEV
fastq
reads
I2
1
Illumina NovaSeq X
223HCCLT3
2
394 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4987LBGM
fastq
reads
I1
1
Illumina NovaSeq X
223HCCLT3
2
485 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6972ZZKH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO0967LMSM
igvf:corces_donor_BANN1973
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO3471KCPD
igvf:corces_donor_BANN1647
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5208BPDO
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP009_G7_ATAC
Ryan Corces, Gladstone Institute UCSF