{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS2972VXMB/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2972VXMB",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"assay_slims": [
"CRISPR screens"
],
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS2972VXMB](/measurement-sets/IGVFDS2972VXMB/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS2972VXMB/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS2972VXMB](/measurement-sets/IGVFDS2972VXMB/) has sequence file(s) [IGVFFI0934PIPG](/sequence-files/IGVFFI0934PIPG/), [IGVFFI3028FULR](/sequence-files/IGVFFI3028FULR/), [IGVFFI2046GKAD](/sequence-files/IGVFFI2046GKAD/), [IGVFFI0573KOVA](/sequence-files/IGVFFI0573KOVA/), [IGVFFI1426INMN](/sequence-files/IGVFFI1426INMN/), [IGVFFI2550OEAA](/sequence-files/IGVFFI2550OEAA/), [IGVFFI3976KGWO](/sequence-files/IGVFFI3976KGWO/), [IGVFFI6646ZJTY](/sequence-files/IGVFFI6646ZJTY/), [IGVFFI0003MEJV](/sequence-files/IGVFFI0003MEJV/), [IGVFFI4196SPIG](/sequence-files/IGVFFI4196SPIG/), [IGVFFI4289KGCD](/sequence-files/IGVFFI4289KGCD/), [IGVFFI8142YLZB](/sequence-files/IGVFFI8142YLZB/), [IGVFFI2611RSKI](/sequence-files/IGVFFI2611RSKI/), [IGVFFI2241UEVZ](/sequence-files/IGVFFI2241UEVZ/), [IGVFFI5414PUUX](/sequence-files/IGVFFI5414PUUX/), [IGVFFI0696XKPP](/sequence-files/IGVFFI0696XKPP/), [IGVFFI1954USZO](/sequence-files/IGVFFI1954USZO/), [IGVFFI7317TSSA](/sequence-files/IGVFFI7317TSSA/), [IGVFFI4743ADRG](/sequence-files/IGVFFI4743ADRG/), [IGVFFI5625LZHW](/sequence-files/IGVFFI5625LZHW/), [IGVFFI4333GMSC](/sequence-files/IGVFFI4333GMSC/), [IGVFFI9813DPYM](/sequence-files/IGVFFI9813DPYM/), [IGVFFI7114TTGP](/sequence-files/IGVFFI7114TTGP/), [IGVFFI9612JETZ](/sequence-files/IGVFFI9612JETZ/), [IGVFFI7240OGAK](/sequence-files/IGVFFI7240OGAK/), [IGVFFI7688LJZS](/sequence-files/IGVFFI7688LJZS/), [IGVFFI4821MTLB](/sequence-files/IGVFFI4821MTLB/), [IGVFFI5174DPOB](/sequence-files/IGVFFI5174DPOB/), [IGVFFI0896PLHC](/sequence-files/IGVFFI0896PLHC/), [IGVFFI8834NSTE](/sequence-files/IGVFFI8834NSTE/), [IGVFFI9321HGGT](/sequence-files/IGVFFI9321HGGT/), [IGVFFI5563BMBP](/sequence-files/IGVFFI5563BMBP/), [IGVFFI8207KHSU](/sequence-files/IGVFFI8207KHSU/), [IGVFFI9355HVRG](/sequence-files/IGVFFI9355HVRG/), [IGVFFI1965TUYQ](/sequence-files/IGVFFI1965TUYQ/), [IGVFFI9744TQRY](/sequence-files/IGVFFI9744TQRY/), [IGVFFI5516THEH](/sequence-files/IGVFFI5516THEH/), [IGVFFI4198YWFD](/sequence-files/IGVFFI4198YWFD/), [IGVFFI9868HDDX](/sequence-files/IGVFFI9868HDDX/), [IGVFFI8375OWFQ](/sequence-files/IGVFFI8375OWFQ/), [IGVFFI8532LMDJ](/sequence-files/IGVFFI8532LMDJ/), [IGVFFI8822MXQL](/sequence-files/IGVFFI8822MXQL/), [IGVFFI0902NHPR](/sequence-files/IGVFFI0902NHPR/), [IGVFFI5321CIOC](/sequence-files/IGVFFI5321CIOC/), [IGVFFI6421UAUH](/sequence-files/IGVFFI6421UAUH/), [IGVFFI4169IBES](/sequence-files/IGVFFI4169IBES/), [IGVFFI3750LBJX](/sequence-files/IGVFFI3750LBJX/), [IGVFFI5184IFFE](/sequence-files/IGVFFI5184IFFE/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS2972VXMB/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2972VXMB](/measurement-sets/IGVFDS2972VXMB/) has sequence file(s): [IGVFFI0934PIPG](/sequence-files/IGVFFI0934PIPG/), [IGVFFI3028FULR](/sequence-files/IGVFFI3028FULR/), [IGVFFI2046GKAD](/sequence-files/IGVFFI2046GKAD/), [IGVFFI0573KOVA](/sequence-files/IGVFFI0573KOVA/), [IGVFFI1426INMN](/sequence-files/IGVFFI1426INMN/), [IGVFFI2550OEAA](/sequence-files/IGVFFI2550OEAA/), [IGVFFI3976KGWO](/sequence-files/IGVFFI3976KGWO/), [IGVFFI6646ZJTY](/sequence-files/IGVFFI6646ZJTY/), [IGVFFI0003MEJV](/sequence-files/IGVFFI0003MEJV/), [IGVFFI4196SPIG](/sequence-files/IGVFFI4196SPIG/), [IGVFFI4289KGCD](/sequence-files/IGVFFI4289KGCD/), [IGVFFI8142YLZB](/sequence-files/IGVFFI8142YLZB/), [IGVFFI2611RSKI](/sequence-files/IGVFFI2611RSKI/), [IGVFFI2241UEVZ](/sequence-files/IGVFFI2241UEVZ/), [IGVFFI5414PUUX](/sequence-files/IGVFFI5414PUUX/), [IGVFFI0696XKPP](/sequence-files/IGVFFI0696XKPP/), [IGVFFI1954USZO](/sequence-files/IGVFFI1954USZO/), [IGVFFI7317TSSA](/sequence-files/IGVFFI7317TSSA/), [IGVFFI4743ADRG](/sequence-files/IGVFFI4743ADRG/), [IGVFFI5625LZHW](/sequence-files/IGVFFI5625LZHW/), [IGVFFI4333GMSC](/sequence-files/IGVFFI4333GMSC/), [IGVFFI9813DPYM](/sequence-files/IGVFFI9813DPYM/), [IGVFFI7114TTGP](/sequence-files/IGVFFI7114TTGP/), [IGVFFI9612JETZ](/sequence-files/IGVFFI9612JETZ/), [IGVFFI7240OGAK](/sequence-files/IGVFFI7240OGAK/), [IGVFFI7688LJZS](/sequence-files/IGVFFI7688LJZS/), [IGVFFI4821MTLB](/sequence-files/IGVFFI4821MTLB/), [IGVFFI5174DPOB](/sequence-files/IGVFFI5174DPOB/), [IGVFFI0896PLHC](/sequence-files/IGVFFI0896PLHC/), [IGVFFI8834NSTE](/sequence-files/IGVFFI8834NSTE/), [IGVFFI9321HGGT](/sequence-files/IGVFFI9321HGGT/), [IGVFFI5563BMBP](/sequence-files/IGVFFI5563BMBP/), [IGVFFI8207KHSU](/sequence-files/IGVFFI8207KHSU/), [IGVFFI9355HVRG](/sequence-files/IGVFFI9355HVRG/), [IGVFFI1965TUYQ](/sequence-files/IGVFFI1965TUYQ/), [IGVFFI9744TQRY](/sequence-files/IGVFFI9744TQRY/), [IGVFFI5516THEH](/sequence-files/IGVFFI5516THEH/), [IGVFFI4198YWFD](/sequence-files/IGVFFI4198YWFD/), [IGVFFI9868HDDX](/sequence-files/IGVFFI9868HDDX/), [IGVFFI8375OWFQ](/sequence-files/IGVFFI8375OWFQ/), [IGVFFI8532LMDJ](/sequence-files/IGVFFI8532LMDJ/), [IGVFFI8822MXQL](/sequence-files/IGVFFI8822MXQL/), [IGVFFI0902NHPR](/sequence-files/IGVFFI0902NHPR/), [IGVFFI5321CIOC](/sequence-files/IGVFFI5321CIOC/), [IGVFFI6421UAUH](/sequence-files/IGVFFI6421UAUH/), [IGVFFI4169IBES](/sequence-files/IGVFFI4169IBES/), [IGVFFI3750LBJX](/sequence-files/IGVFFI3750LBJX/), [IGVFFI5184IFFE](/sequence-files/IGVFFI5184IFFE/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2972VXMB/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6320VUBH](/in-vitro-systems/IGVFSM6320VUBH/) has in progress subobject construct library set [IGVFDS2374NXLW](/construct-library-sets/IGVFDS2374NXLW/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6320VUBH/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6320VUBH](/in-vitro-systems/IGVFSM6320VUBH/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6320VUBH/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS2972VXMB](/measurement-sets/IGVFDS2972VXMB/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS2972VXMB/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2374NXLW/",
"accession": "IGVFDS2374NXLW",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4989HPTW/",
"accession": "IGVFDS4989HPTW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-THP1-PE2_Exp1_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-11-30T22:49:17.603441+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI0934PIPG/",
"accession": "IGVFFI0934PIPG",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:49:25.626162+00:00",
"file_format": "fastq",
"file_size": 3326465,
"href": "/sequence-files/IGVFFI0934PIPG/@@download/IGVFFI0934PIPG.fastq.gz",
"md5sum": "0cbc961ddb539f2e2753b2320caaacb0",
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"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep5_S281_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3028FULR/",
"accession": "IGVFFI3028FULR",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:46:26.561664+00:00",
"file_format": "fastq",
"file_size": 3658926,
"href": "/sequence-files/IGVFFI3028FULR/@@download/IGVFFI3028FULR.fastq.gz",
"md5sum": "816ca43028f25f260b7ef7442142510c",
"s3_uri": "s3://igvf-files/2023/12/05/bbd01618-5c35-4d37-8ca7-9b4524d6f976/IGVFFI3028FULR.fastq.gz",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep11_S377_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2046GKAD/",
"accession": "IGVFFI2046GKAD",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:50:49.149021+00:00",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep7_S373_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0573KOVA/",
"accession": "IGVFFI0573KOVA",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:46:07.769385+00:00",
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"href": "/sequence-files/IGVFFI0573KOVA/@@download/IGVFFI0573KOVA.fastq.gz",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep11_S377_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1426INMN/",
"accession": "IGVFFI1426INMN",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:50:21.233069+00:00",
"file_format": "fastq",
"file_size": 783366,
"href": "/sequence-files/IGVFFI1426INMN/@@download/IGVFFI1426INMN.fastq.gz",
"md5sum": "25352ff44ad9e544cbfad4312dac3345",
"s3_uri": "s3://igvf-files/2023/12/05/a771e8e9-d277-44ba-bbc6-9d6137bd81ec/IGVFFI1426INMN.fastq.gz",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep7_S373_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2550OEAA/",
"accession": "IGVFFI2550OEAA",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:49:44.259367+00:00",
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"href": "/sequence-files/IGVFFI2550OEAA/@@download/IGVFFI2550OEAA.fastq.gz",
"md5sum": "6f88e8d09c05a499d57b72706fa0a7d8",
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"term_name": "Illumina NextSeq 550"
},
"status": "released",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3976KGWO/",
"accession": "IGVFFI3976KGWO",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:48:17.535131+00:00",
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"md5sum": "35eaa6d88e1d386cd87cee61a63630e0",
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep3_S279_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6646ZJTY/",
"accession": "IGVFFI6646ZJTY",
"aliases": [
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],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:46:54.136492+00:00",
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"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep12_S378_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0003MEJV/",
"accession": "IGVFFI0003MEJV",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:51:26.058418+00:00",
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"href": "/sequence-files/IGVFFI0003MEJV/@@download/IGVFFI0003MEJV.fastq.gz",
"md5sum": "24d32527b8d2b61778c20612c573bc04",
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"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep8_S374_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4196SPIG/",
"accession": "IGVFFI4196SPIG",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:44:44.527934+00:00",
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"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep4_S280_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5184IFFE/",
"accession": "IGVFFI5184IFFE",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:45:02.904568+00:00",
"file_format": "fastq",
"file_size": 3126489,
"href": "/sequence-files/IGVFFI5184IFFE/@@download/IGVFFI5184IFFE.fastq.gz",
"md5sum": "934e5ab0b47b00c22b8176e7a3f39624",
"s3_uri": "s3://igvf-files/2023/12/05/8b3c49af-61fb-4542-bd9c-eaea4ae0a43e/IGVFFI5184IFFE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD-PCRrep1_S277_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS5031MNRR/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:05:51.743514+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM6320VUBH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6320VUBH",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinD"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 76-100% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-05T22:44:44.527934+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"PPIase F",
"peptidylprolyl isomerase F",
"Cyp-D",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIF",
"CyP-M",
"cyclophilin F",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"cyclophilin 3",
"cyclophilin D",
"rotamase F",
"mitochondrial cyclophilin",
"CypD",
"CYP3"
]
}
],
"uuid": "54fe8523-2a76-454a-83a0-37468eabd6df"
}