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MeasurementSet
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IGVFDS2943LQHU
IGVFDS2943LQHU
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP014_G3_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0037KTSY
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
1
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0450XGYZ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
2
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1260ZZRC
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
1
526 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1463XJAW
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
3
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1755ZXLG
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257VGLT3
1
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2643XVYA
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
4
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2675NGGL
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
4
520 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4352MFUK
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
1
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5381JHRX
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
4
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5504IDSB
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257VGLT3
4
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4901QTFI
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
Donors
16 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO0565OSFT
igvf:corces_donor_BANN1805
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1464XWYC
igvf:corces_donor_BANN1809
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4015EJFT
igvf:corces_donor_BANN0526
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4273OHGB
igvf:corces_donor_BANN0322
female
Homo sapiens
IGVFDO4783EEYU
igvf:corces_donor_BANN1865
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3707VRFM
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP014_G3_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF