Home

IGVFDS2907ITTR

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 29.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX10-SC4_snATAC
Attribution
Jimmie Ye, UCSF

Sequencing Results (Illumina)

24 items
Read Names
fastq
reads
R3
67
Read 2
7.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
67
1.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
63
1.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
64
Read 2
6.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
68
1.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
68
Read 2
7.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
65
1.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
66
696 MB
Jimmie Ye, UCSF
validated
fastq
reads
R1
67
Read 1
4.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
63
Read 1
4.6 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 29.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_53
male
Homo sapiens
  • jimmie-ye:donor_29
male
Homo sapiens
  • jimmie-ye:donor_310
female
Homo sapiens
  • jimmie-ye:donor_192
male
Homo sapiens
  • jimmie-ye:donor_72
female
Homo sapiens
  • jimmie-ye:donor_339
female
Homo sapiens
  • jimmie-ye:donor_202
female
Homo sapiens
  • jimmie-ye:donor_67
female
Homo sapiens
  • jimmie-ye:donor_226
male
Homo sapiens
  • jimmie-ye:donor_23
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX10-SC4_snRNA
Jimmie Ye, UCSF