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MeasurementSet
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IGVFDS2903AZNH
IGVFDS2903AZNH
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP001_G7_RNA
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0558ELBU
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
4
224 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0582CFXV
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
2
213 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1018BOGX
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
2
219 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1901JMDK
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
4
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2508VACH
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
3
232 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3462FVQI
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
3
728 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3613KKNE
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
1
209 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4326LURT
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
1
644 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6041QPKR
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
1
203 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6334VQAC
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
4
230 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM8255WJLC
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7317MFVE
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP001_G7_ATAC
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF