{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS2890JPBI/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2890JPBI",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"assay_slims": [
"CRISPR screens"
],
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9682FICS](/in-vitro-systems/IGVFSM9682FICS/) has in progress subobject construct library set [IGVFDS2374NXLW](/construct-library-sets/IGVFDS2374NXLW/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9682FICS/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM9682FICS](/in-vitro-systems/IGVFSM9682FICS/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM9682FICS/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS2890JPBI](/measurement-sets/IGVFDS2890JPBI/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS2890JPBI/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS2890JPBI](/measurement-sets/IGVFDS2890JPBI/) has sequence file(s) [IGVFFI3996SLQD](/sequence-files/IGVFFI3996SLQD/), [IGVFFI6567OYIP](/sequence-files/IGVFFI6567OYIP/), [IGVFFI4344VWNK](/sequence-files/IGVFFI4344VWNK/), [IGVFFI4381FEBA](/sequence-files/IGVFFI4381FEBA/), [IGVFFI7362QOBW](/sequence-files/IGVFFI7362QOBW/), [IGVFFI4016LPKF](/sequence-files/IGVFFI4016LPKF/), [IGVFFI5191TUWS](/sequence-files/IGVFFI5191TUWS/), [IGVFFI7740IMWI](/sequence-files/IGVFFI7740IMWI/), [IGVFFI7481XZXZ](/sequence-files/IGVFFI7481XZXZ/), [IGVFFI3373OIXF](/sequence-files/IGVFFI3373OIXF/), [IGVFFI3830CXZX](/sequence-files/IGVFFI3830CXZX/), [IGVFFI1812EKNF](/sequence-files/IGVFFI1812EKNF/), [IGVFFI5998KOKY](/sequence-files/IGVFFI5998KOKY/), [IGVFFI7487UDEI](/sequence-files/IGVFFI7487UDEI/), [IGVFFI1850DDYJ](/sequence-files/IGVFFI1850DDYJ/), [IGVFFI9706GXXS](/sequence-files/IGVFFI9706GXXS/), [IGVFFI1321BNMB](/sequence-files/IGVFFI1321BNMB/), [IGVFFI8385GMLW](/sequence-files/IGVFFI8385GMLW/), [IGVFFI8989NGLO](/sequence-files/IGVFFI8989NGLO/), [IGVFFI0697XWAD](/sequence-files/IGVFFI0697XWAD/), [IGVFFI5811OAMN](/sequence-files/IGVFFI5811OAMN/), [IGVFFI0800JMWS](/sequence-files/IGVFFI0800JMWS/), [IGVFFI7110ATXK](/sequence-files/IGVFFI7110ATXK/), [IGVFFI6743NNPF](/sequence-files/IGVFFI6743NNPF/), [IGVFFI7340AZGM](/sequence-files/IGVFFI7340AZGM/), [IGVFFI0700XOKO](/sequence-files/IGVFFI0700XOKO/), [IGVFFI0493CTCY](/sequence-files/IGVFFI0493CTCY/), [IGVFFI5239RHET](/sequence-files/IGVFFI5239RHET/), [IGVFFI6925OHTT](/sequence-files/IGVFFI6925OHTT/), [IGVFFI0314KWEU](/sequence-files/IGVFFI0314KWEU/), [IGVFFI0718OXAW](/sequence-files/IGVFFI0718OXAW/), [IGVFFI8079IBFY](/sequence-files/IGVFFI8079IBFY/), [IGVFFI9473RNFO](/sequence-files/IGVFFI9473RNFO/), [IGVFFI5063KUKT](/sequence-files/IGVFFI5063KUKT/), [IGVFFI0548AADC](/sequence-files/IGVFFI0548AADC/), [IGVFFI5319NFSX](/sequence-files/IGVFFI5319NFSX/), [IGVFFI8373HBBT](/sequence-files/IGVFFI8373HBBT/), [IGVFFI6520WBXG](/sequence-files/IGVFFI6520WBXG/), [IGVFFI7326EMMV](/sequence-files/IGVFFI7326EMMV/), [IGVFFI0308TTZY](/sequence-files/IGVFFI0308TTZY/), [IGVFFI0523FNVT](/sequence-files/IGVFFI0523FNVT/), [IGVFFI8067ITSQ](/sequence-files/IGVFFI8067ITSQ/), [IGVFFI4470TDLX](/sequence-files/IGVFFI4470TDLX/), [IGVFFI4188KJCD](/sequence-files/IGVFFI4188KJCD/), [IGVFFI2812SIWG](/sequence-files/IGVFFI2812SIWG/), [IGVFFI2345KMLH](/sequence-files/IGVFFI2345KMLH/), [IGVFFI4767NVZD](/sequence-files/IGVFFI4767NVZD/), [IGVFFI7335RLWX](/sequence-files/IGVFFI7335RLWX/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS2890JPBI/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2890JPBI](/measurement-sets/IGVFDS2890JPBI/) has sequence file(s): [IGVFFI3996SLQD](/sequence-files/IGVFFI3996SLQD/), [IGVFFI6567OYIP](/sequence-files/IGVFFI6567OYIP/), [IGVFFI4344VWNK](/sequence-files/IGVFFI4344VWNK/), [IGVFFI4381FEBA](/sequence-files/IGVFFI4381FEBA/), [IGVFFI7362QOBW](/sequence-files/IGVFFI7362QOBW/), [IGVFFI4016LPKF](/sequence-files/IGVFFI4016LPKF/), [IGVFFI5191TUWS](/sequence-files/IGVFFI5191TUWS/), [IGVFFI7740IMWI](/sequence-files/IGVFFI7740IMWI/), [IGVFFI7481XZXZ](/sequence-files/IGVFFI7481XZXZ/), [IGVFFI3373OIXF](/sequence-files/IGVFFI3373OIXF/), [IGVFFI3830CXZX](/sequence-files/IGVFFI3830CXZX/), [IGVFFI1812EKNF](/sequence-files/IGVFFI1812EKNF/), [IGVFFI5998KOKY](/sequence-files/IGVFFI5998KOKY/), [IGVFFI7487UDEI](/sequence-files/IGVFFI7487UDEI/), [IGVFFI1850DDYJ](/sequence-files/IGVFFI1850DDYJ/), [IGVFFI9706GXXS](/sequence-files/IGVFFI9706GXXS/), [IGVFFI1321BNMB](/sequence-files/IGVFFI1321BNMB/), [IGVFFI8385GMLW](/sequence-files/IGVFFI8385GMLW/), [IGVFFI8989NGLO](/sequence-files/IGVFFI8989NGLO/), [IGVFFI0697XWAD](/sequence-files/IGVFFI0697XWAD/), [IGVFFI5811OAMN](/sequence-files/IGVFFI5811OAMN/), [IGVFFI0800JMWS](/sequence-files/IGVFFI0800JMWS/), [IGVFFI7110ATXK](/sequence-files/IGVFFI7110ATXK/), [IGVFFI6743NNPF](/sequence-files/IGVFFI6743NNPF/), [IGVFFI7340AZGM](/sequence-files/IGVFFI7340AZGM/), [IGVFFI0700XOKO](/sequence-files/IGVFFI0700XOKO/), [IGVFFI0493CTCY](/sequence-files/IGVFFI0493CTCY/), [IGVFFI5239RHET](/sequence-files/IGVFFI5239RHET/), [IGVFFI6925OHTT](/sequence-files/IGVFFI6925OHTT/), [IGVFFI0314KWEU](/sequence-files/IGVFFI0314KWEU/), [IGVFFI0718OXAW](/sequence-files/IGVFFI0718OXAW/), [IGVFFI8079IBFY](/sequence-files/IGVFFI8079IBFY/), [IGVFFI9473RNFO](/sequence-files/IGVFFI9473RNFO/), [IGVFFI5063KUKT](/sequence-files/IGVFFI5063KUKT/), [IGVFFI0548AADC](/sequence-files/IGVFFI0548AADC/), [IGVFFI5319NFSX](/sequence-files/IGVFFI5319NFSX/), [IGVFFI8373HBBT](/sequence-files/IGVFFI8373HBBT/), [IGVFFI6520WBXG](/sequence-files/IGVFFI6520WBXG/), [IGVFFI7326EMMV](/sequence-files/IGVFFI7326EMMV/), [IGVFFI0308TTZY](/sequence-files/IGVFFI0308TTZY/), [IGVFFI0523FNVT](/sequence-files/IGVFFI0523FNVT/), [IGVFFI8067ITSQ](/sequence-files/IGVFFI8067ITSQ/), [IGVFFI4470TDLX](/sequence-files/IGVFFI4470TDLX/), [IGVFFI4188KJCD](/sequence-files/IGVFFI4188KJCD/), [IGVFFI2812SIWG](/sequence-files/IGVFFI2812SIWG/), [IGVFFI2345KMLH](/sequence-files/IGVFFI2345KMLH/), [IGVFFI4767NVZD](/sequence-files/IGVFFI4767NVZD/), [IGVFFI7335RLWX](/sequence-files/IGVFFI7335RLWX/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2890JPBI/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS2890JPBI](/measurement-sets/IGVFDS2890JPBI/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS2890JPBI/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2374NXLW/",
"accession": "IGVFDS2374NXLW",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4989HPTW/",
"accession": "IGVFDS4989HPTW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-THP1-PE2_Exp1_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-11-30T22:49:12.579877+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI3996SLQD/",
"accession": "IGVFFI3996SLQD",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:15:58.116682+00:00",
"file_format": "fastq",
"file_size": 833020,
"href": "/sequence-files/IGVFFI3996SLQD/@@download/IGVFFI3996SLQD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/22d20340-0424-4cec-9442-df76e9e78cd4/IGVFFI3996SLQD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep2_S230_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6567OYIP/",
"accession": "IGVFFI6567OYIP",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:15:38.384608+00:00",
"file_format": "fastq",
"file_size": 2899651,
"href": "/sequence-files/IGVFFI6567OYIP/@@download/IGVFFI6567OYIP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/c2c8e633-479d-4db8-a435-068dea81943d/IGVFFI6567OYIP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep12_S330_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4344VWNK/",
"accession": "IGVFFI4344VWNK",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:13:33.089458+00:00",
"file_format": "fastq",
"file_size": 856566,
"href": "/sequence-files/IGVFFI4344VWNK/@@download/IGVFFI4344VWNK.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/1a77a88a-4ddf-419f-9144-a3f38778776e/IGVFFI4344VWNK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep1_S229_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4381FEBA/",
"accession": "IGVFFI4381FEBA",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:15:47.819727+00:00",
"file_format": "fastq",
"file_size": 3520367,
"href": "/sequence-files/IGVFFI4381FEBA/@@download/IGVFFI4381FEBA.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/b85fd18d-298f-443f-b9e8-94f509118c96/IGVFFI4381FEBA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep12_S330_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7362QOBW/",
"accession": "IGVFFI7362QOBW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:15:19.892776+00:00",
"file_format": "fastq",
"file_size": 796915,
"href": "/sequence-files/IGVFFI7362QOBW/@@download/IGVFFI7362QOBW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/0daaebe6-c68f-4d56-ac5b-72005495dff7/IGVFFI7362QOBW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep12_S330_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4016LPKF/",
"accession": "IGVFFI4016LPKF",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:17:44.084982+00:00",
"file_format": "fastq",
"file_size": 3555470,
"href": "/sequence-files/IGVFFI4016LPKF/@@download/IGVFFI4016LPKF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/72209b2c-f027-48ed-9738-b4719180b5fd/IGVFFI4016LPKF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep4_S232_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5191TUWS/",
"accession": "IGVFFI5191TUWS",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:14:01.133412+00:00",
"file_format": "fastq",
"file_size": 791187,
"href": "/sequence-files/IGVFFI5191TUWS/@@download/IGVFFI5191TUWS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/0e77a85b-17c7-406e-99b9-7174cf023838/IGVFFI5191TUWS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep10_S328_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7740IMWI/",
"accession": "IGVFFI7740IMWI",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:15:29.150570+00:00",
"file_format": "fastq",
"file_size": 795381,
"href": "/sequence-files/IGVFFI7740IMWI/@@download/IGVFFI7740IMWI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/fe4ddad7-9223-46f1-9781-a44a3fae24c0/IGVFFI7740IMWI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep12_S330_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7481XZXZ/",
"accession": "IGVFFI7481XZXZ",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:19:35.229606+00:00",
"file_format": "fastq",
"file_size": 3606937,
"href": "/sequence-files/IGVFFI7481XZXZ/@@download/IGVFFI7481XZXZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/27712cc9-47b5-4c13-aacf-cbb481719e4d/IGVFFI7481XZXZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep7_S325_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3373OIXF/",
"accession": "IGVFFI3373OIXF",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:18:58.521064+00:00",
"file_format": "fastq",
"file_size": 3592893,
"href": "/sequence-files/IGVFFI3373OIXF/@@download/IGVFFI3373OIXF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/e9d391a8-8cd4-4f53-893b-3afbbb93c2c7/IGVFFI3373OIXF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep6_S234_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3830CXZX/",
"accession": "IGVFFI3830CXZX",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:20:39.670056+00:00",
"file_format": "fastq",
"file_size": 2911853,
"href": "/sequence-files/IGVFFI3830CXZX/@@download/IGVFFI3830CXZX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/e93e3f8a-23ba-4674-aa6f-e2e6e564821a/IGVFFI3830CXZX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep9_S327_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1812EKNF/",
"accession": "IGVFFI1812EKNF",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:15:01.151312+00:00",
"file_format": "fastq",
"file_size": 2971078,
"href": "/sequence-files/IGVFFI1812EKNF/@@download/IGVFFI1812EKNF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/6cb9fb45-9f7f-469d-8330-64d08faf30a0/IGVFFI1812EKNF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep11_S329_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5998KOKY/",
"accession": "IGVFFI5998KOKY",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:18:21.759689+00:00",
"file_format": "fastq",
"file_size": 3673308,
"href": "/sequence-files/IGVFFI5998KOKY/@@download/IGVFFI5998KOKY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/740b4735-8261-48b6-bfe2-5772e2a454e9/IGVFFI5998KOKY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep5_S233_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7487UDEI/",
"accession": "IGVFFI7487UDEI",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:16:29.668486+00:00",
"file_format": "fastq",
"file_size": 3638003,
"href": "/sequence-files/IGVFFI7487UDEI/@@download/IGVFFI7487UDEI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/99c83b3b-8f09-4ebd-84e9-b65ce8f8b3a2/IGVFFI7487UDEI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep2_S230_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1850DDYJ/",
"accession": "IGVFFI1850DDYJ",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:19:16.959057+00:00",
"file_format": "fastq",
"file_size": 807774,
"href": "/sequence-files/IGVFFI1850DDYJ/@@download/IGVFFI1850DDYJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/19d2e903-b484-4234-942c-3527b9fcb16d/IGVFFI1850DDYJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep7_S325_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9706GXXS/",
"accession": "IGVFFI9706GXXS",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:18:02.827898+00:00",
"file_format": "fastq",
"file_size": 838056,
"href": "/sequence-files/IGVFFI9706GXXS/@@download/IGVFFI9706GXXS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/722e72e0-3ee1-414f-94bc-7d8cb89f34b7/IGVFFI9706GXXS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep5_S233_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1321BNMB/",
"accession": "IGVFFI1321BNMB",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:15:10.440197+00:00",
"file_format": "fastq",
"file_size": 3594340,
"href": "/sequence-files/IGVFFI1321BNMB/@@download/IGVFFI1321BNMB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/58bf6441-bd20-4da2-8d74-6fccc7bdf2c0/IGVFFI1321BNMB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep11_S329_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8385GMLW/",
"accession": "IGVFFI8385GMLW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:14:38.873212+00:00",
"file_format": "fastq",
"file_size": 900133,
"href": "/sequence-files/IGVFFI8385GMLW/@@download/IGVFFI8385GMLW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/95fb4ff7-0069-41c9-9645-a203bf6c4be2/IGVFFI8385GMLW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep11_S329_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8989NGLO/",
"accession": "IGVFFI8989NGLO",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:18:40.181398+00:00",
"file_format": "fastq",
"file_size": 805941,
"href": "/sequence-files/IGVFFI8989NGLO/@@download/IGVFFI8989NGLO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/6fa1670e-59c3-4e83-8cf1-00328beeee41/IGVFFI8989NGLO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep6_S234_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0697XWAD/",
"accession": "IGVFFI0697XWAD",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:13:51.705070+00:00",
"file_format": "fastq",
"file_size": 3798725,
"href": "/sequence-files/IGVFFI0697XWAD/@@download/IGVFFI0697XWAD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/40248da2-67f1-4ac3-a3a4-e76f339cb064/IGVFFI0697XWAD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep1_S229_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5811OAMN/",
"accession": "IGVFFI5811OAMN",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:13:23.923944+00:00",
"file_format": "fastq",
"file_size": 888155,
"href": "/sequence-files/IGVFFI5811OAMN/@@download/IGVFFI5811OAMN.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/043d3c28-0184-494e-8a7d-235ad26475d0/IGVFFI5811OAMN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep1_S229_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0800JMWS/",
"accession": "IGVFFI0800JMWS",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:17:34.989064+00:00",
"file_format": "fastq",
"file_size": 2980929,
"href": "/sequence-files/IGVFFI0800JMWS/@@download/IGVFFI0800JMWS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/e7dfc561-7b51-4ef6-8622-e93cc7cf4c85/IGVFFI0800JMWS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep4_S232_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7110ATXK/",
"accession": "IGVFFI7110ATXK",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:20:30.403533+00:00",
"file_format": "fastq",
"file_size": 800079,
"href": "/sequence-files/IGVFFI7110ATXK/@@download/IGVFFI7110ATXK.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/0e8efb63-2a2a-47ac-9396-1bb64fc48dba/IGVFFI7110ATXK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep9_S327_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6743NNPF/",
"accession": "IGVFFI6743NNPF",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:19:26.009843+00:00",
"file_format": "fastq",
"file_size": 2984773,
"href": "/sequence-files/IGVFFI6743NNPF/@@download/IGVFFI6743NNPF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/c63e3759-f53d-40a4-aa62-e56219c0a2ab/IGVFFI6743NNPF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep7_S325_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7340AZGM/",
"accession": "IGVFFI7340AZGM",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:16:16.726346+00:00",
"file_format": "fastq",
"file_size": 3052882,
"href": "/sequence-files/IGVFFI7340AZGM/@@download/IGVFFI7340AZGM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/23b2ee80-2941-467f-a364-386281b05f61/IGVFFI7340AZGM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep2_S230_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0700XOKO/",
"accession": "IGVFFI0700XOKO",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:17:16.360353+00:00",
"file_format": "fastq",
"file_size": 825409,
"href": "/sequence-files/IGVFFI0700XOKO/@@download/IGVFFI0700XOKO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/070614a0-cf82-423b-a433-ead5a9de61c3/IGVFFI0700XOKO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep4_S232_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0493CTCY/",
"accession": "IGVFFI0493CTCY",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:14:51.900668+00:00",
"file_format": "fastq",
"file_size": 820878,
"href": "/sequence-files/IGVFFI0493CTCY/@@download/IGVFFI0493CTCY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/63c1a205-95f0-4b55-95fc-5cc471794941/IGVFFI0493CTCY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep11_S329_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5239RHET/",
"accession": "IGVFFI5239RHET",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:16:48.203021+00:00",
"file_format": "fastq",
"file_size": 821455,
"href": "/sequence-files/IGVFFI5239RHET/@@download/IGVFFI5239RHET.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/bfc02847-f838-4734-ab1a-16eba069e2f9/IGVFFI5239RHET.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep3_S231_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6925OHTT/",
"accession": "IGVFFI6925OHTT",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:17:07.004453+00:00",
"file_format": "fastq",
"file_size": 3618645,
"href": "/sequence-files/IGVFFI6925OHTT/@@download/IGVFFI6925OHTT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/5ebb7d67-c3a2-4541-8610-66be216bb3f7/IGVFFI6925OHTT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep3_S231_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0314KWEU/",
"accession": "IGVFFI0314KWEU",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:14:29.394052+00:00",
"file_format": "fastq",
"file_size": 3491509,
"href": "/sequence-files/IGVFFI0314KWEU/@@download/IGVFFI0314KWEU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/967ab518-0cc0-459f-9080-17467cc909da/IGVFFI0314KWEU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep10_S328_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0718OXAW/",
"accession": "IGVFFI0718OXAW",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:20:02.491117+00:00",
"file_format": "fastq",
"file_size": 2913913,
"href": "/sequence-files/IGVFFI0718OXAW/@@download/IGVFFI0718OXAW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/7cd9dc46-5357-4727-a304-e80435ec4c74/IGVFFI0718OXAW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep8_S326_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8079IBFY/",
"accession": "IGVFFI8079IBFY",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:17:53.504096+00:00",
"file_format": "fastq",
"file_size": 936724,
"href": "/sequence-files/IGVFFI8079IBFY/@@download/IGVFFI8079IBFY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/bf3b8c64-003d-4cb4-9685-1e12eb9b84fb/IGVFFI8079IBFY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep5_S233_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9473RNFO/",
"accession": "IGVFFI9473RNFO",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:14:10.392478+00:00",
"file_format": "fastq",
"file_size": 785713,
"href": "/sequence-files/IGVFFI9473RNFO/@@download/IGVFFI9473RNFO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/be95036c-7b56-4296-bdc4-17d67c4abe19/IGVFFI9473RNFO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep10_S328_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5063KUKT/",
"accession": "IGVFFI5063KUKT",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:19:53.346900+00:00",
"file_format": "fastq",
"file_size": 801859,
"href": "/sequence-files/IGVFFI5063KUKT/@@download/IGVFFI5063KUKT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/65a49935-d50a-4c52-9384-ee002563bf6c/IGVFFI5063KUKT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep8_S326_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0548AADC/",
"accession": "IGVFFI0548AADC",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:20:11.790426+00:00",
"file_format": "fastq",
"file_size": 3547625,
"href": "/sequence-files/IGVFFI0548AADC/@@download/IGVFFI0548AADC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/ea5e5850-4439-4d5a-a0f8-8fc7957a85a9/IGVFFI0548AADC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep8_S326_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5319NFSX/",
"accession": "IGVFFI5319NFSX",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:13:42.462787+00:00",
"file_format": "fastq",
"file_size": 3194162,
"href": "/sequence-files/IGVFFI5319NFSX/@@download/IGVFFI5319NFSX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/41b1228c-92ca-4ca5-a3fe-ce4c1e4d3ace/IGVFFI5319NFSX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep1_S229_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8373HBBT/",
"accession": "IGVFFI8373HBBT",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:16:07.336680+00:00",
"file_format": "fastq",
"file_size": 816511,
"href": "/sequence-files/IGVFFI8373HBBT/@@download/IGVFFI8373HBBT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/e3d592d6-1a91-4c8a-a924-26f1675dff9c/IGVFFI8373HBBT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep2_S230_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6520WBXG/",
"accession": "IGVFFI6520WBXG",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:18:49.285451+00:00",
"file_format": "fastq",
"file_size": 3021503,
"href": "/sequence-files/IGVFFI6520WBXG/@@download/IGVFFI6520WBXG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/07875b2d-9938-47b1-980d-010b4093ad2c/IGVFFI6520WBXG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep6_S234_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7326EMMV/",
"accession": "IGVFFI7326EMMV",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:17:25.697459+00:00",
"file_format": "fastq",
"file_size": 798117,
"href": "/sequence-files/IGVFFI7326EMMV/@@download/IGVFFI7326EMMV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/879f209e-7a08-4b9d-990f-dc3d6ff99af5/IGVFFI7326EMMV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep4_S232_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0308TTZY/",
"accession": "IGVFFI0308TTZY",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:18:31.171652+00:00",
"file_format": "fastq",
"file_size": 827658,
"href": "/sequence-files/IGVFFI0308TTZY/@@download/IGVFFI0308TTZY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/d5fcb3f5-32fc-49f9-a095-eb78eeac14c7/IGVFFI0308TTZY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep6_S234_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0523FNVT/",
"accession": "IGVFFI0523FNVT",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:20:21.109572+00:00",
"file_format": "fastq",
"file_size": 803970,
"href": "/sequence-files/IGVFFI0523FNVT/@@download/IGVFFI0523FNVT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/49acd161-acee-4bee-9f0d-f2dfb7ad0b22/IGVFFI0523FNVT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep9_S327_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8067ITSQ/",
"accession": "IGVFFI8067ITSQ",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:19:44.377624+00:00",
"file_format": "fastq",
"file_size": 795647,
"href": "/sequence-files/IGVFFI8067ITSQ/@@download/IGVFFI8067ITSQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/fbdb8421-256b-4f69-89ac-0b32705fd11a/IGVFFI8067ITSQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep8_S326_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4470TDLX/",
"accession": "IGVFFI4470TDLX",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:18:12.336015+00:00",
"file_format": "fastq",
"file_size": 3080478,
"href": "/sequence-files/IGVFFI4470TDLX/@@download/IGVFFI4470TDLX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/10a9d6d4-b213-4594-9dab-f0ff666b05ba/IGVFFI4470TDLX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep5_S233_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4188KJCD/",
"accession": "IGVFFI4188KJCD",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:20:49.092789+00:00",
"file_format": "fastq",
"file_size": 3539995,
"href": "/sequence-files/IGVFFI4188KJCD/@@download/IGVFFI4188KJCD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/1b36e772-080d-4725-8e4e-408ce4ae2801/IGVFFI4188KJCD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep9_S327_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2812SIWG/",
"accession": "IGVFFI2812SIWG",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:16:38.951178+00:00",
"file_format": "fastq",
"file_size": 843654,
"href": "/sequence-files/IGVFFI2812SIWG/@@download/IGVFFI2812SIWG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/e6ead5ae-28f9-4feb-a730-6dc0fb30c5e2/IGVFFI2812SIWG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep3_S231_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2345KMLH/",
"accession": "IGVFFI2345KMLH",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:19:07.694537+00:00",
"file_format": "fastq",
"file_size": 820953,
"href": "/sequence-files/IGVFFI2345KMLH/@@download/IGVFFI2345KMLH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/c99957c1-af32-4b30-a594-78a11a551b04/IGVFFI2345KMLH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep7_S325_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4767NVZD/",
"accession": "IGVFFI4767NVZD",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:14:19.984076+00:00",
"file_format": "fastq",
"file_size": 2879919,
"href": "/sequence-files/IGVFFI4767NVZD/@@download/IGVFFI4767NVZD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/6a990ea7-c0eb-4325-9c79-309358507beb/IGVFFI4767NVZD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep10_S328_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7335RLWX/",
"accession": "IGVFFI7335RLWX",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T22:16:57.649281+00:00",
"file_format": "fastq",
"file_size": 3037074,
"href": "/sequence-files/IGVFFI7335RLWX/@@download/IGVFFI7335RLWX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/eca47ddd-c4cc-4fbc-af18-5c6aed5ef2c7/IGVFFI7335RLWX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD-PCRrep3_S231_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS5031MNRR/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:05:50.155309+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM9682FICS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9682FICS",
"aliases": [
"jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep1-BinD"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 76-100% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-05T22:13:23.923944+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"PPIase F",
"peptidylprolyl isomerase F",
"Cyp-D",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIF",
"CyP-M",
"cyclophilin F",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"cyclophilin 3",
"cyclophilin D",
"rotamase F",
"mitochondrial cyclophilin",
"CypD",
"CYP3"
]
}
],
"uuid": "d81b514b-3109-47c3-a755-bb413738a845"
}