{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2883IFIK",
"aliases": [
"bradley-bernstein:scRNA Lib 42",
"buenrostro-bernstein:scRNA Lib 42"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM1494VRXC](/primary-cells/IGVFSM1494VRXC/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM1494VRXC/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2883IFIK](/measurement-sets/IGVFDS2883IFIK/) has sequence file(s): [IGVFFI9090AFWL](/sequence-files/IGVFFI9090AFWL/), [IGVFFI8529TTVP](/sequence-files/IGVFFI8529TTVP/), [IGVFFI3473GQJB](/sequence-files/IGVFFI3473GQJB/), [IGVFFI4736QAJS](/sequence-files/IGVFFI4736QAJS/), [IGVFFI8388DPQE](/sequence-files/IGVFFI8388DPQE/), [IGVFFI3065XWYZ](/sequence-files/IGVFFI3065XWYZ/), [IGVFFI3447THLT](/sequence-files/IGVFFI3447THLT/), [IGVFFI1121OQIH](/sequence-files/IGVFFI1121OQIH/), [IGVFFI2602YMLR](/sequence-files/IGVFFI2602YMLR/), [IGVFFI1589UEFV](/sequence-files/IGVFFI1589UEFV/), [IGVFFI8548GJAC](/sequence-files/IGVFFI8548GJAC/), [IGVFFI6931RIUA](/sequence-files/IGVFFI6931RIUA/), [IGVFFI2563JVBD](/sequence-files/IGVFFI2563JVBD/), [IGVFFI8120CIIJ](/sequence-files/IGVFFI8120CIIJ/), [IGVFFI5812OMXZ](/sequence-files/IGVFFI5812OMXZ/), [IGVFFI9599JRXK](/sequence-files/IGVFFI9599JRXK/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2883IFIK/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2883IFIK](/measurement-sets/IGVFDS2883IFIK/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2883IFIK/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"Item"
],
"accession": "IGVFSM1494VRXC",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 7",
"buenrostro-bernstein:BioSam 4568_SS-PKR 7"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:30.965257+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "02277dbe-7cf3-4198-9123-b896b54642c3"
}