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IGVFDS2877JGNS
IGVFDS2877JGNS
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP004_G7_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1012LOYN
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
5
330 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1670ZFOT
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
8
292 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2361ASTF
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
8
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2429CAQM
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
6
321 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2785WEWN
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
6
260 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2833RPYT
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
6
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3429BEEF
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
5
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3992OLNO
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
7
307 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4334XWIJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
8
882 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4687KNBZ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
6
969 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM1427BZIP
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO2801HZMZ
igvf:corces_donor_BANN1028
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO3971UIZC
igvf:corces_donor_BANN0217
female
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
IGVFDO6837RJUQ
igvf:corces_donor_BANN1201
male
Homo sapiens
IGVFDO8344LUQZ
igvf:corces_donor_BANN0621
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0455VVOE
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP004_G7_ATAC
Ryan Corces, Gladstone Institute UCSF