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INDEXED
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MeasurementSet
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IGVFDS2859PJGU
IGVFDS2859PJGU
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X017_G4_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0923BGBQ
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
HTHCCDSX5
3
7.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2325LLDK
fastq
reads
I1
1
Illumina NovaSeq 6000
HTHCCDSX5
3
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3323UBLK
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
HTHCCDSX5
3
4.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8355IVFN
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
HTHCCDSX5
3
7.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6070GNPG
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0773NPOH
igvf:corces_donor_BANN0560
male
Homo sapiens
IGVFDO0877AIRF
igvf:corces_donor_BANN0417
male
Homo sapiens
IGVFDO3317CNEB
igvf:corces_donor_BANN1902
male
Homo sapiens
IGVFDO3971UIZC
igvf:corces_donor_BANN0217
female
Homo sapiens
IGVFDO4053HEKW
igvf:corces_donor_BANN1317
male
Homo sapiens
IGVFDO4273OHGB
igvf:corces_donor_BANN0322
female
Homo sapiens
IGVFDO5912PIZP
igvf:corces_donor_BANN1830
female
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9895NTUE
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X017_G4_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF