Home

IGVFDS2850BWAN

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP010_G3_ATAC

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R2
1
Barcode index
223HGTLT3
3
805 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223HGTLT3
2
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HGTLT3
1
338 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HGTLT3
3
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HGTLT3
4
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HGTLT3
4
338 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223HGTLT3
4
785 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223HGTLT3
2
791 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HGTLT3
3
346 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HGTLT3
1
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples

Donors

14 items
Aliases
  • igvf:corces_donor_BANN1973
male
Homo sapiens
  • igvf:corces_donor_BANN1809
male
Homo sapiens
  • igvf:corces_donor_BANN1256
female
Homo sapiens
  • igvf:corces_donor_BANN1719
female
Homo sapiens
  • igvf:corces_donor_BANN1070
male
Homo sapiens
  • igvf:corces_donor_BANN0919
male
Homo sapiens
  • igvf:corces_donor_BANN1830
female
Homo sapiens
  • igvf:corces_donor_BANN0912
male
Homo sapiens
  • igvf:corces_donor_BANN9917
female
Homo sapiens
  • igvf:corces_donor_BANN1639
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP010_G3_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF