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MeasurementSet
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IGVFDS2806EVXQ
IGVFDS2806EVXQ
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X040_G1_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0303RMUM
fastq
reads
I2
1
Illumina NovaSeq X
222YMLLT3
2
389 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0370JFZV
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
222YMLLT3
2
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1477QOGI
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
222YMLLT3
1
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2148VRDO
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
222YMLLT3
3
3.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2436OVUF
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
222YMLLT3
2
3.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3205XQYJ
fastq
reads
I1
1
Illumina NovaSeq X
222YMLLT3
4
448 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3579XTHJ
fastq
reads
I2
1
Illumina NovaSeq X
222YMLLT3
3
381 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3669ZXAH
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
222YMLLT3
1
2.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4499XTER
fastq
reads
I1
1
Illumina NovaSeq X
222YMLLT3
2
439 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5225WVVW
fastq
reads
I1
1
Illumina NovaSeq X
222YMLLT3
3
431 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7243MOJZ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0909BNTN
igvf:corces_donor_BANN1554
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO3971UIZC
igvf:corces_donor_BANN0217
female
Homo sapiens
IGVFDO4053HEKW
igvf:corces_donor_BANN1317
male
Homo sapiens
IGVFDO4103FHPT
igvf:corces_donor_BANN9702
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO5912PIZP
igvf:corces_donor_BANN1830
female
Homo sapiens
IGVFDO7095OCLJ
igvf:corces_donor_BANN9917
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5414UFNC
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_X040_G1_ATAC
Ryan Corces, Gladstone Institute UCSF