{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2791OYQB",
"aliases": [
"bradley-bernstein:scATAC Lib 38",
"buenrostro-bernstein:scATAC Lib 38"
],
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"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0461CADR](/primary-cells/IGVFSM0461CADR/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0461CADR/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2791OYQB](/measurement-sets/IGVFDS2791OYQB/) has sequence file(s): [IGVFFI6166JJGS](/sequence-files/IGVFFI6166JJGS/), [IGVFFI6321UQFH](/sequence-files/IGVFFI6321UQFH/), [IGVFFI2137AHWG](/sequence-files/IGVFFI2137AHWG/), [IGVFFI4727BJHZ](/sequence-files/IGVFFI4727BJHZ/), [IGVFFI9855RMVM](/sequence-files/IGVFFI9855RMVM/), [IGVFFI2908LWVS](/sequence-files/IGVFFI2908LWVS/), [IGVFFI8983YGIB](/sequence-files/IGVFFI8983YGIB/), [IGVFFI9740SFHS](/sequence-files/IGVFFI9740SFHS/), [IGVFFI6384MYQJ](/sequence-files/IGVFFI6384MYQJ/), [IGVFFI0253PGHC](/sequence-files/IGVFFI0253PGHC/), [IGVFFI2359GUHY](/sequence-files/IGVFFI2359GUHY/), [IGVFFI5277ZXBD](/sequence-files/IGVFFI5277ZXBD/), [IGVFFI5536ZFXC](/sequence-files/IGVFFI5536ZFXC/), [IGVFFI0759SQEN](/sequence-files/IGVFFI0759SQEN/), [IGVFFI8258DZWI](/sequence-files/IGVFFI8258DZWI/), [IGVFFI1148ADNZ](/sequence-files/IGVFFI1148ADNZ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2791OYQB/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2791OYQB](/measurement-sets/IGVFDS2791OYQB/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2791OYQB/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 7), female, Homo sapiens (19 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:25:38.055515+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "ac97a68a-73f6-42fc-96f5-4a6c978b161b"
}