Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS2731RLBA
IGVFDS2731RLBA
preview
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP014_G7_RNA
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1506ZDDT
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
6
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2585UTSK
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
5
368 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3350OACU
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
8
2.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3860QVNP
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
7
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4497ISMA
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
5
428 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5410QPZZ
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
7
403 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6448FTOV
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
7
344 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6452YBUS
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
5
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6678LUQZ
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
8
379 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7963CTIG
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0496VQZI
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples
Donors
16 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO0565OSFT
igvf:corces_donor_BANN1805
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1464XWYC
igvf:corces_donor_BANN1809
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4015EJFT
igvf:corces_donor_BANN0526
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4273OHGB
igvf:corces_donor_BANN0322
female
Homo sapiens
IGVFDO4783EEYU
igvf:corces_donor_BANN1865
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6041FJHB
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP014_G7_ATAC
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF