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INDEXED
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MeasurementSet
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IGVFDS2723SVTT
IGVFDS2723SVTT
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X032_G6_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1925YVZG
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
HV7VHDSX5
3
9.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2222EPDI
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
HV7VHDSX5
3
9.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3624NIUW
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
HV7VHDSX5
3
3.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9895ABFA
fastq
reads
I1
1
Illumina NovaSeq 6000
HV7VHDSX5
3
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM8028VLKJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO3497MBPK
igvf:corces_donor_BANN0002
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO5912PIZP
igvf:corces_donor_BANN1830
female
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
IGVFDO7649CIGW
igvf:corces_donor_BANN9902
female
Homo sapiens
IGVFDO7678VYKP
igvf:corces_donor_BANN1235
male
Homo sapiens
IGVFDO7754VJKM
igvf:corces_donor_BANN0341
male
Homo sapiens
IGVFDO8547HLIG
igvf:corces_donor_BANN1812
female
Homo sapiens
IGVFDO8584FBOT
igvf:corces_donor_BANN0315
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5452ZVED
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X032_G6_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF